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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239838 (84 seq.)
>W1710782903
LJFJ01000006
Bacillota
Limosilactobacillus fermentum [LJFJ]
275911
275986
+
Gln
CTG
[ENA]
¡û
>W1710801592
LJWZ01000074
Bacillota
Limosilactobacillus fermentum [LJWZ]
5237
5312
+
Gln
CTG
[ENA]
¡û
>W1711185550
LWNM01000098
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
4938
5013
+
Gln
CTG
[ENA]
¡û
>W131203196
ASXU01000060
Bacillota
Limosilactobacillus fermentum FTDC8312 [ASXU]
1902
1827
-
Gln
CTG
[ENA]
¡û
>W1711487638
MKGE01000064
Bacillota
Limosilactobacillus fermentum [MKGE]
5747
5822
+
Gln
CTG
[ENA]
¡û
>W1712106922
NIWV01000014
Bacillota
Limosilactobacillus fermentum [NIWV]
35243
35168
-
Gln
CTG
[ENA]
¡û
>C171057896
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
1380811
1380886
+
Gln
CTG
-
¡û
>C171088299
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
533470
533395
-
Gln
CTG
-
¡û
>C171115622
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
531517
531592
+
Gln
CTG
-
¡û
>C171123261
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
467801
467876
+
Gln
CTG
-
¡û
>WENV180410560
OBUX01000223
[OBUX] human gut metagenome; faeces
27652
27577
-
Gln
CTG
[ENA]
¢þ
>WENV180442266
OBWW01026666
[OBWW] human gut metagenome; faeces
352
277
-
Gln
CTG
[ENA]
¢þ
>W141092474
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
497951
498026
+
Gln
CTG
[ENA]
¡û
>W141094662
AVCT01000270
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
5113
5188
+
Gln
CTG
[ENA]
¡û
>WENV181458444
OGEJ01029844
[OGEJ] metagenome; Human gut stool
125
49
-
Gln
CTG
[ENA]
¢þ
>WENV181469134
OGES01063061
[OGES] metagenome; Human gut stool
261
186
-
Gln
CTG
[ENA]
¢þ
>WENV181473864
OGFC01000444
[OGFC] metagenome; Human gut stool
4951
5026
+
Gln
CTG
[ENA]
¢þ
>W141148182
AWXS01000052
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
8978
9053
+
Gln
CTG
[ENA]
¡û
>WENV181506194
OGGM01000281
[OGGM] metagenome; Human gut stool
35293
35218
-
Gln
CTG
[ENA]
¢þ
>WENV181519092
OGHB01005359
[OGHB] metagenome; Human gut stool
2052
1977
-
Gln
CTG
[ENA]
¢þ
>WENV181553030
OGIQ01000892
[OGIQ] metagenome; Human gut stool
558
483
-
Gln
CTG
[ENA]
¢þ
>WENV181555839
OGIU01000352
[OGIU] metagenome; Human gut stool
4951
5026
+
Gln
CTG
[ENA]
¢þ
>WENV181564659
OGJH01017919
[OGJH] metagenome; Human gut stool
203
278
+
Gln
CTG
[ENA]
¢þ
>WENV181588147
OGKH01000895
[OGKH] metagenome; Human gut stool
7901
7826
-
Gln
CTG
[ENA]
¢þ
>W141180738
AYHA01000047
Bacillota
Limosilactobacillus fermentum NB-22 [AYHA]
4951
5026
+
Gln
CTG
[ENA]
¡û
>WENV181933623
OGYS01014134
[OGYS] human gut metagenome; faeces
606
531
-
Gln
CTG
[ENA]
¢þ
>WENV182404093
OIEU01002604
[OIEU] human gut metagenome; human gut
1275
1200
-
Gln
CTG
[ENA]
¢þ
>WENV182431023
OIIG01011336
[OIIG] human gut metagenome; human gut
335
260
-
Gln
CTG
[ENA]
¢þ
>WENV182954457
OKWA01001630
[OKWA] human gut metagenome; human gut
1071
996
-
Gln
CTG
[ENA]
¢þ
>C08006044
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
497688
497763
+
Gln
CTG
[Ensembl]
¡û
>WENV183182743
OLPK01001039
[OLPK] human gut metagenome; faeces
4939
5014
+
Gln
CTG
[ENA]
¢þ
>WENV183217480
OLQI01000449
[OLQI] human gut metagenome; faeces
34001
33926
-
Gln
CTG
[ENA]
¢þ
>WENV183307270
OLTD01010273
[OLTD] human gut metagenome; faeces
233
308
+
Gln
CTG
[ENA]
¢þ
>C181004017
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
487089
487164
+
Gln
CTG
-
¡û
>C181054748
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
474172
474247
+
Gln
CTG
-
¡û
>C181196721
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
2031724
2031799
+
Gln
CTG
-
¡û
>C181226921
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
510381
510456
+
Gln
CTG
-
¡û
>C191012479
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
720990
720915
-
Gln
CTG
-
¡û
>C191105230
CP033371
Bacillota
Limosilactobacillus fermentum DR9 [CP033371]
482876
482801
-
Gln
CTG
-
¡û
>C191119252
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
264334
264259
-
Gln
CTG
-
¡û
>C191121347
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
463462
463537
+
Gln
CTG
-
¡û
>C191134218
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
1681191
1681116
-
Gln
CTG
-
¡û
>C191134275
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
929839
929764
-
Gln
CTG
-
¡û
>W09122630
ACGI01000063
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
4906
4981
+
Gln
CTG
[ENA]
¡û
>W141805337
JPKN01000052
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
5354
5429
+
Gln
CTG
[ENA]
¡û
>W1910181271
BJLV01000041
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
7882
7807
-
Gln
CTG
[ENA]
¡û
>W1910374064
FUHY01000050
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
4974
5049
+
Gln
CTG
[ENA]
¡û
>W1910374098
FUHZ01000041
Bacillota
Limosilactobacillus fermentum S6 [FUHZ]
5021
5096
+
Gln
CTG
[ENA]
¡û
>W1910954321
NJPQ01000051
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
5051
5126
+
Gln
CTG
[ENA]
¡û
>W1911533695
OKQY01000010
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
47039
46964
-
Gln
CTG
[ENA]
¡û
>W1810058983
PDKX01000054
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
4735
4660
-
Gln
CTG
[ENA]
¡û
>W1810090579
PGGE01000014
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
40782
40707
-
Gln
CTG
[ENA]
¡û
>W1810090650
PGGI01000018
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
5023
5098
+
Gln
CTG
[ENA]
¡û
>W1810090684
PGGJ01000025
Bacillota
Limosilactobacillus fermentum 311 [PGGJ]
26963
26888
-
Gln
CTG
[ENA]
¡û
>W1810190812
PKKD01000001
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
4990
5065
+
Gln
CTG
[ENA]
¡û
>W1810196512
PNBB01000005
Bacillota
Limosilactobacillus fermentum LfU21 [PNBB]
56982
56907
-
Gln
CTG
[ENA]
¡û
>W1810223776
POTQ01000015
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
52939
52864
-
Gln
CTG
[ENA]
¡û
>W1810297046
PTLW01000014
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
11855
11930
+
Gln
CTG
[ENA]
¡û
>W1810473340
QAHK01000016
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
5046
5121
+
Gln
CTG
[ENA]
¡û
>W1810489172
QAZV01000016
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
34072
33997
-
Gln
CTG
[ENA]
¡û
>W1810695486
QLNN01000026
Bacillota
Limosilactobacillus fermentum LF2 [QLNN]
9119
9194
+
Gln
CTG
[ENA]
¡û
>W1810705626
QMJL01000072
Bacillota
Limosilactobacillus fermentum KMB_612 [QMJL]
992
917
-
Gln
CTG
[ENA]
¡û
>W1810705637
QMJM01000001
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
157094
157019
-
Gln
CTG
[ENA]
¡û
>W1810811213
QRYA01000017
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
4953
5028
+
Gln
CTG
[ENA]
¡û
>W1810811866
QRYM01000038
Bacillota
Limosilactobacillus fermentum AF15-40LB [QRYM]
5129
5054
-
Gln
CTG
[ENA]
¡û
>W1810814650
QSAL01000010
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
5005
5080
+
Gln
CTG
[ENA]
¡û
>C151084241
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
522060
522135
+
Gln
CTG
-
¡û
>W10103387
ACQG01000060
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
5008
5083
+
Gln
CTG
[ENA]
¡û
>W1510021802
BCAH01000025
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
104929
104855
-
Gln
CTG
[ENA]
¡û
>W1510022533
CBZV010000006
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
5084
5159
+
Gln
CTG
[ENA]
¡û
>C10108344
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
498215
498290
+
Gln
CTG
[Ensembl]
¡û
>W11103543
ACQG01000060
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
5008
5083
+
Gln
CTG
[ENA]
¡û
>W1511443757
JUTH01000068
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
5001
5076
+
Gln
CTG
[ENA]
¡û
>W1511567832
LAIK01000007
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
284578
284503
-
Gln
CTG
[ENA]
¡û
>W1511589491
LBDG01000012
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
34480
34405
-
Gln
CTG
[ENA]
¡û
>W1511589545
LBDH01000046
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
4616
4541
-
Gln
CTG
[ENA]
¡û
>C161077722
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1414404
1414329
-
Gln
CTG
-
¡û
>W1610083201
CBUR010000061
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
4998
5073
+
Gln
CTG
[ENA]
¡û
>C131016164
CP005958
Bacillota
Limosilactobacillus fermentum F-6 [CP005958]
509246
509321
+
Gln
CTG
[Ensembl]
¡û
>W1610527919
JQAU01000016
Bacillota
Limosilactobacillus fermentum [JQAU]
5756
5831
+
Gln
CTG
[ENA]
¡û
>W1610647411
LJFJ01000006
Bacillota
Limosilactobacillus fermentum [LJFJ]
275911
275986
+
Gln
CTG
[ENA]
¡û
>W1610665549
LJWZ01000074
Bacillota
Limosilactobacillus fermentum [LJWZ]
5237
5312
+
Gln
CTG
[ENA]
¡û
>W1710088321
CBUR010000061
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
4998
5073
+
Gln
CTG
[ENA]
¡û
>W1710629550
JQAU01000016
Bacillota
Limosilactobacillus fermentum [JQAU]
5756
5831
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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