This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239879 (119 seq.)
>W1710786259
LJIV01000001
Bacillota
Leuconostoc lactis [LJIV]
42276
42201
-
Lys
CTT
[ENA]
¡û
>W1710786264
LJIV01000002
Bacillota
Leuconostoc lactis [LJIV]
91775
91850
+
Lys
CTT
[ENA]
¡û
>W131053626
ANAG01000003
Bacillota
Ligilactobacillus saerimneri 30a [ANAG]
163177
163251
+
Lys
CTT
[ENA]
¡û
>W131053627
ANAG01000003
Bacillota
Ligilactobacillus saerimneri 30a [ANAG]
163893
163969
+
Lys
CTT
[ENA]
¡û
>W131230458
AUHQ01000003
Bacillota
Ligilactobacillus saerimneri DSM 16049 [AUHQ]
17535
17461
-
Lys
CTT
[ENA]
¡û
>W131230459
AUHQ01000003
Bacillota
Ligilactobacillus saerimneri DSM 16049 [AUHQ]
16820
16744
-
Lys
CTT
[ENA]
¡û
>W1711627416
MPLL01000008
Bacillota
Leuconostoc lactis [MPLL]
46938
46863
-
Lys
CTT
[ENA]
¡û
>W1711627428
MPLL01000023
Bacillota
Leuconostoc lactis [MPLL]
19117
19192
+
Lys
CTT
[ENA]
¡û
>W1711627508
MPLN01000007
Bacillota
Leuconostoc lactis [MPLN]
46938
46863
-
Lys
CTT
[ENA]
¡û
>W1711627522
MPLN01000025
Bacillota
Leuconostoc lactis [MPLN]
19117
19192
+
Lys
CTT
[ENA]
¡û
>W1711999767
NDXG01000004
Bacillota
Leuconostoc citreum [NDXG]
92652
92727
+
Lys
CTT
[ENA]
¡û
>W1711999785
NDXG01000012
Bacillota
Leuconostoc citreum [NDXG]
32746
32822
+
Lys
CTT
[ENA]
¡û
>C171047480
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
713734
713809
+
Lys
CTT
-
¡û
>C171047495
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
584932
584857
-
Lys
CTT
-
¡û
>WENV180299213
OBJB01004027
[OBJB] human gut metagenome; human gut
145
221
+
Lys
CTT
[ENA]
¢þ
>WENV180503386
OCAM01017927
[OCAM] human gut metagenome; faeces
613
540
-
Lys
CTT
[ENA]
¢þ
>WENV180564588
OCLE01004856
[OCLE] human gut metagenome; human gut
145
218
+
Lys
CTT
[ENA]
¢þ
>WENV182610682
OJJW01000104
[OJJW] metagenome; faeces
17013
16940
-
Lys
CTT
[ENA]
¢þ
>WENV182610707
OJJW01000172
[OJJW] metagenome; faeces
6274
6347
+
Lys
CTT
[ENA]
¢þ
>WENV182629158
OJKR01012287
[OJKR] metagenome; surface
498
573
+
Lys
CTT
[ENA]
¢þ
>WENV182642865
OJLP01009379
[OJLP] metagenome; surface
354
427
+
Lys
CTT
[ENA]
¢þ
>C08005988
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1719466
1719542
+
Lys
CTT
[Ensembl]
¡û
>C08006025
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
1587426
1587351
-
Lys
CTT
[Ensembl]
¡û
>WENV170659353
JXWR01003907
[JXWR] soil metagenome; rice field; ambient CO2
192
117
-
Lys
CTT
[ENA]
¢þ
>C191013626
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1419635
1419711
+
Lys
CTT
-
¡û
>C191013628
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1659356
1659429
+
Lys
CTT
-
¡û
>C191013661
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
926675
926600
-
Lys
CTT
-
¡û
>C191155331
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
1807941
1808014
+
Lys
CTT
-
¡û
>C191155367
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
1666208
1666135
-
Lys
CTT
-
¡û
>W141695498
JMEA01000004
Bacillota
Leuconostoc lactis [JMEA]
91635
91710
+
Lys
CTT
[ENA]
¡û
>W141695510
JMEA01000009
Bacillota
Leuconostoc lactis [JMEA]
33581
33656
+
Lys
CTT
[ENA]
¡û
>W1910181811
BJMJ01000001
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
38298
38371
+
Lys
CTT
[ENA]
¡û
>W1910181831
BJMJ01000022
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
9532
9459
-
Lys
CTT
[ENA]
¡û
>W1910821968
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
855873
855949
+
Lys
CTT
[ENA]
¡û
>W1910822024
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
724211
724138
-
Lys
CTT
[ENA]
¡û
>W1911177193
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1663112
1663185
+
Lys
CTT
[ENA]
¡û
>W1911177230
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
1490239
1490166
-
Lys
CTT
[ENA]
¡û
>W1911283586
NTJC01000002
Bacillota
Leuconostoc citreum TR116 [NTJC]
94105
94178
+
Lys
CTT
[ENA]
¡û
>W1911283609
NTJC01000007
Bacillota
Leuconostoc citreum TR116 [NTJC]
51510
51434
-
Lys
CTT
[ENA]
¡û
>W1911495502
OBMW01000035
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
21134
21207
+
Lys
CTT
[ENA]
¡û
>W1911495511
OBMW01000050
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
36440
36513
+
Lys
CTT
[ENA]
¡û
>W1911540019
ONZM01000025
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
11565
11492
-
Lys
CTT
[ENA]
¡û
>W1911540022
ONZM01000028
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
38333
38408
+
Lys
CTT
[ENA]
¡û
>W1911541756
OOIO01000015
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
11564
11491
-
Lys
CTT
[ENA]
¡û
>W1911541757
OOIO01000018
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
23620
23695
+
Lys
CTT
[ENA]
¡û
>W1911631646
PUFH01000001
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
32734
32810
+
Lys
CTT
[ENA]
¡û
>W1911631698
PUFH01000004
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
93851
93924
+
Lys
CTT
[ENA]
¡û
>W1911631757
PUFI01000005
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
165701
165774
+
Lys
CTT
[ENA]
¡û
>W1911631790
PUFI01000009
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
107784
107711
-
Lys
CTT
[ENA]
¡û
>W1810784473
QRAS01000001
Bacillota
Weissella soli CECT 7031 [QRAS]
537039
536964
-
Lys
CTT
[ENA]
¡û
>W1810784482
QRAS01000002
Bacillota
Weissella soli CECT 7031 [QRAS]
257111
257038
-
Lys
CTT
[ENA]
¡û
>W1810784506
QRAS01000003
Bacillota
Weissella soli CECT 7031 [QRAS]
58847
58771
-
Lys
CTT
[ENA]
¡û
>W1510046231
CCNG01000015
Bacillota
Leuconostoc citreum [CCNG]
61144
61069
-
Lys
CTT
[ENA]
¡û
>W1510046232
CCNG01000016
Bacillota
Leuconostoc citreum [CCNG]
56730
56806
+
Lys
CTT
[ENA]
¡û
>W1510046294
CCNH01000010
Bacillota
Leuconostoc citreum [CCNH]
132614
132690
+
Lys
CTT
[ENA]
¡û
>W1510046316
CCNH01000010
Bacillota
Leuconostoc citreum [CCNH]
7636
7561
-
Lys
CTT
[ENA]
¡û
>C10108490
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
1361463
1361538
+
Lys
CTT
[Ensembl]
¡û
>C10108501
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
1219696
1219621
-
Lys
CTT
[Ensembl]
¡û
>C11112616
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
1205427
1205502
+
Lys
CTT
[Ensembl]
¡û
>C11112667
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
1063683
1063608
-
Lys
CTT
[Ensembl]
¡û
>C11112799
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
374526
374601
+
Lys
CTT
[Ensembl]
¡û
>C11112808
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1814152
1814227
+
Lys
CTT
[Ensembl]
¡û
>W1511468956
JVUU01000022
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
57945
57869
-
Lys
CTT
[ENA]
¡û
>W1511468966
JVUU01000023
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
60750
60675
-
Lys
CTT
[ENA]
¡û
>W1511469033
JVUV01000036
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
75329
75254
-
Lys
CTT
[ENA]
¡û
>W11137118
AEGQ01000045
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
1059
1134
+
Lys
CTT
[ENA]
¡û
>W11137120
AEGQ01000048
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
18989
19064
+
Lys
CTT
[ENA]
¡û
>W11138653
AEIZ01000010
Bacillota
Leuconostoc fallax KCTC 3537 [AEIZ]
30357
30284
-
Lys
CTT
[ENA]
¡û
>W11138670
AEIZ01000020
Bacillota
Leuconostoc fallax KCTC 3537 [AEIZ]
73852
73925
+
Lys
CTT
[ENA]
¡û
>W11140932
AEMI01000016
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
226096
226021
-
Lys
CTT
[ENA]
¡û
>W11140940
AEMI01000022
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
5947
6022
+
Lys
CTT
[ENA]
¡û
>W11140976
AEMJ01000324
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
2077
2152
+
Lys
CTT
[ENA]
¡û
>W11140994
AEMJ01000492
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
6367
6292
-
Lys
CTT
[ENA]
¡û
>W11142036
AEOR01000421
Bacillota
Leuconostoc lactis KCTC 3528 [AEOR]
319
244
-
Lys
CTT
[ENA]
¡û
>W11142038
AEOR01000477
Bacillota
Leuconostoc lactis KCTC 3528 [AEOR]
320
245
-
Lys
CTT
[ENA]
¡û
>W11142040
AEOR01000543
Bacillota
Leuconostoc lactis KCTC 3528 [AEOR]
461
536
+
Lys
CTT
[ENA]
¡û
>W11184730
BACM01001106
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
1531
1456
-
Lys
CTT
[ENA]
¡û
>W11184755
BACM01002242
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
1424
1349
-
Lys
CTT
[ENA]
¡û
>W11184756
BACM01002292
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
164
239
+
Lys
CTT
[ENA]
¡û
>C161100103
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
1041266
1041341
+
Lys
CTT
[Ensembl]
¡û
>C161100114
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
908833
908758
-
Lys
CTT
[Ensembl]
¡û
>C161107372
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
379308
379383
+
Lys
CTT
[Ensembl]
¡û
>C161107381
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1852899
1852974
+
Lys
CTT
[Ensembl]
¡û
>W121127451
CAGE01000012
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
32533
32609
+
Lys
CTT
[ENA]
¡û
>W121127494
CAGF01000009
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
32536
32612
+
Lys
CTT
[ENA]
¡û
>W121127547
CAGG01000010
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
32527
32603
+
Lys
CTT
[ENA]
¡û
>W121127431
CAGE01000001
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
60125
60050
-
Lys
CTT
[ENA]
¡û
>W121127485
CAGF01000004
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
11793
11718
-
Lys
CTT
[ENA]
¡û
>W121127527
CAGG01000001
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
171735
171660
-
Lys
CTT
[ENA]
¡û
>W1610187658
FBSX01000011
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
13266
13341
+
Lys
CTT
[ENA]
¡û
>W1610187675
FBSX01000025
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
171098
171023
-
Lys
CTT
[ENA]
¡û
>W1610187698
FBSY01000003
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
13243
13318
+
Lys
CTT
[ENA]
¡û
>W1610187726
FBSY01000017
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
189164
189089
-
Lys
CTT
[ENA]
¡û
>W1610187767
FBTB01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
175189
175114
-
Lys
CTT
[ENA]
¡û
>W1610187772
FBTB01000021
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
14201
14276
+
Lys
CTT
[ENA]
¡û
>W1610187778
FBTC01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
36886
36811
-
Lys
CTT
[ENA]
¡û
>W1610187796
FBTC01000016
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
178495
178420
-
Lys
CTT
[ENA]
¡û
>W1610187824
FBTD01000003
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
122242
122167
-
Lys
CTT
[ENA]
¡û
>W1610187857
FBTD01000022
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
36197
36122
-
Lys
CTT
[ENA]
¡û
>W1610187859
FBTU01000005
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
36897
36822
-
Lys
CTT
[ENA]
¡û
>W1610187892
FBTU01000024
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
121136
121211
+
Lys
CTT
[ENA]
¡û
>C131008306
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
255578
255654
+
Lys
CTT
[Ensembl]
¡û
>C131007794
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
370096
370171
+
Lys
CTT
[Ensembl]
¡û
>C131007803
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1776571
1776646
+
Lys
CTT
[Ensembl]
¡û
>C131008333
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
123623
123548
-
Lys
CTT
[Ensembl]
¡û
>W1610650114
LJIV01000001
Bacillota
Leuconostoc lactis [LJIV]
42276
42201
-
Lys
CTT
[ENA]
¡û
>W1610650119
LJIV01000002
Bacillota
Leuconostoc lactis [LJIV]
91775
91850
+
Lys
CTT
[ENA]
¡û
>W1710189274
FBSX01000011
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
13266
13341
+
Lys
CTT
[ENA]
¡û
>W1710189291
FBSX01000025
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
171098
171023
-
Lys
CTT
[ENA]
¡û
>W1710189314
FBSY01000003
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
13243
13318
+
Lys
CTT
[ENA]
¡û
>W1710189342
FBSY01000017
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
189164
189089
-
Lys
CTT
[ENA]
¡û
>W1710189383
FBTB01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
175189
175114
-
Lys
CTT
[ENA]
¡û
>W1710189388
FBTB01000021
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
14201
14276
+
Lys
CTT
[ENA]
¡û
>W1710189394
FBTC01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
36886
36811
-
Lys
CTT
[ENA]
¡û
>W1710189412
FBTC01000016
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
178495
178420
-
Lys
CTT
[ENA]
¡û
>W1710189440
FBTD01000003
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
122242
122167
-
Lys
CTT
[ENA]
¡û
>W1710189473
FBTD01000022
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
36197
36122
-
Lys
CTT
[ENA]
¡û
>W1710189475
FBTU01000005
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
36897
36822
-
Lys
CTT
[ENA]
¡û
>W1710189508
FBTU01000024
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
121136
121211
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK