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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.239940 (13 seq.)
>W1711573441
MNDE01000024
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_57_17 [MNDE]
46612
46687
+
Ala
TGC
[ENA]
¡û
>W1711574648
MNFV01000118
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_61_5 [MNFV]
4344
4419
+
Ala
TGC
[ENA]
¡û
>W1711575261
MNHV01000150
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_2_60_7 [MNHV]
4359
4434
+
Ala
TGC
[ENA]
¡û
>W1711576138
MNKN01000136
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_60_10 [MNKN]
7510
7585
+
Ala
TGC
[ENA]
¡û
>WENV180264810
OBEQ011604972
[OBEQ] groundwater metagenome; groundwater
22
97
+
Ala
TGC
[ENA]
¢þ
>WENV180268122
OBEQ011931868
[OBEQ] groundwater metagenome; groundwater
3368
3293
-
Ala
TGC
[ENA]
¢þ
>WENV180269338
OBEQ012051923
[OBEQ] groundwater metagenome; groundwater
4970
4895
-
Ala
TGC
[ENA]
¢þ
>WENV180294949
OBIZ01005982
[OBIZ] soil metagenome; soil
134
209
+
Ala
TGC
[ENA]
¢þ
>WENV180321027
OBKQ01086263
[OBKQ] soil metagenome; Clay
156
230
+
Ala
TGC
[ENA]
¢þ
>WENV181294747
OFHH01036143
[OFHH] soil metagenome; Clay
167
92
-
Ala
TGC
[ENA]
¢þ
>WENV181297277
OFHK01023589
[OFHK] soil metagenome; Clay
1378
1303
-
Ala
TGC
[ENA]
¢þ
>WENV183673358
ORJL011267911
[ORJL] groundwater metagenome; groundwater
2698
2773
+
Ala
TGC
[ENA]
¢þ
>WENV170648270
JRHI01000092
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
85232
85157
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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