This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240095 (83 seq.)
>W1710872037
LMLR01000011
Actinomycetota
Arthrobacter sp. Leaf69 [LMLR]
353361
353436
+
Arg
TCT
[ENA]
¡û
>W1710875592
LMON01000001
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
1049448
1049523
+
Arg
TCT
[ENA]
¡û
>W1710876303
LMPC01000023
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
250097
250172
+
Arg
TCT
[ENA]
¡û
>W1710880009
LMSB01000005
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
93706
93781
+
Arg
TCT
[ENA]
¡û
>W1710880295
LMSG01000001
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
490112
490187
+
Arg
TCT
[ENA]
¡û
>W1710880367
LMSH01000002
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
1221640
1221567
-
Arg
TCT
[ENA]
¡û
>W1710916122
LNUT01000005
Actinomycetota
Arthrobacter sp. EPSL27 [LNUT]
337518
337445
-
Arg
TCT
[ENA]
¡û
>W1710916207
LNUV01000004
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
298561
298636
+
Arg
TCT
[ENA]
¡û
>W1710995756
LQAP01000015
Actinomycetota
Arthrobacter sp. B6 [LQAP]
142411
142486
+
Arg
TCT
[ENA]
¡û
>W1711184063
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
2676970
2677045
+
Arg
TCT
[ENA]
¡û
>W1711719310
MTIC01000001
Actinomycetota
Sinomonas mesophila [MTIC]
113804
113731
-
Arg
TCT
[ENA]
¡û
>W1711768830
MVDG01000057
Actinomycetota
Arthrobacter sp. KBS0703 [MVDG]
36407
36332
-
Arg
TCT
[ENA]
¡û
>C171040602
CP015732
Actinomycetota
Arthrobacter sp. U41 [CP015732]
3916941
3917016
+
Arg
TCT
-
¡û
>W131172237
ARGT01000029
Actinomycetota
Arthrobacter sp. 131MFCol6.1 [ARGT]
734673
734748
+
Arg
TCT
[ENA]
¡û
>W131172276
ARGU01000042
Actinomycetota
Arthrobacter sp. 161MFSha2.1 [ARGU]
396091
396016
-
Arg
TCT
[ENA]
¡û
>W131237734
AUPJ01000493
Actinomycetota
Arthrobacter sp. TB 26 [AUPJ]
11396
11471
+
Arg
TCT
[ENA]
¡û
>C000078
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
2638735
2638663
-
Arg
TCT
[Ensembl]
¡û
>C001001
CP000454
Actinomycetota
Arthrobacter sp. FB24 [CP000454]
2715875
2715947
+
Arg
TCT
[Ensembl]
¡û
>WENV180016377
FSUT01000247
[FSUT] metagenome; soil
2966
3039
+
Arg
TCT
[ENA]
¢þ
>WENV180018441
FSZH01000084
[FSZH] metagenome; soil
2814
2887
+
Arg
TCT
[ENA]
¢þ
>WENV180025648
FTIP01244268
[FTIP] metagenome; soil
276
203
-
Arg
TCT
[ENA]
¢þ
>WENV180694702
OCZS012591102
[OCZS] soil metagenome; soil
150
77
-
Arg
TCT
[ENA]
¢þ
>W141106050
AVPD01000001
Actinomycetota
Arthrobacter sp. AK-YN10 [AVPD]
388375
388300
-
Arg
TCT
[ENA]
¡û
>WENV181191212
OEPS010038908
[OEPS] soil metagenome; soil
664
741
+
Arg
TCT
[ENA]
¢þ
>W141213506
AZSB01000127
Actinomycetota
Arthrobacter sp. I3 [AZSB]
23338
23263
-
Arg
TCT
[ENA]
¡û
>W141216746
AZVC01000017
Actinomycetota
Paenarthrobacter nicotinovorans 231Sha2.1M6 [AZVC]
28658
28733
+
Arg
TCT
[ENA]
¡û
>W141217165
AZVJ01000020
Actinomycetota
Paenarthrobacter nicotinovorans 26Cvi1.1E [AZVJ]
85737
85662
-
Arg
TCT
[ENA]
¡û
>W141278893
JAFW01000001
Actinomycetota
Arthrobacter sp. 31Y [JAFW]
368470
368395
-
Arg
TCT
[ENA]
¡û
>C181000311
AP014718
Actinomycetota
Arthrobacter sp. Hiyo4 [AP014718]
2112778
2112851
+
Arg
TCT
-
¡û
>C181064984
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
3048518
3048443
-
Arg
TCT
-
¡û
>C191164645
CP039290
Actinomycetota
Arthrobacter sp. PAMC25564 [CP039290]
2243970
2243897
-
Arg
TCT
-
¡û
>C191174053
CP040018
Actinomycetota
Arthrobacter sp. 24S4-2 [CP040018]
3428949
3429022
+
Arg
TCT
-
¡û
>C191188279
CP041188
Actinomycetota
Pseudarthrobacter sp. NIBRBAC000502772 [CP041188]
3322509
3322582
+
Arg
TCT
-
¡û
>W141565195
JIBJ01000004
Actinomycetota
Arthrobacter sp. 9MFCol3.1 [JIBJ]
96964
96889
-
Arg
TCT
[ENA]
¡û
>W141701998
JMLE01000001
Actinomycetota
Arthrobacter sp. UNC362MFTsu5.1 [JMLE]
43077
43002
-
Arg
TCT
[ENA]
¡û
>W09102070
AAHG01000024
Actinomycetota
Arthrobacter sp. FB24 [AAHG]
33863
33936
+
Arg
TCT
[ENA]
¡û
>W1910181585
BJMD01000020
Actinomycetota
Paenarthrobacter aurescens NBRC 12136 [BJMD]
29918
29991
+
Arg
TCT
[ENA]
¡û
>W1911532706
OIVI01000076
Actinomycetota
Arthrobacter alpinus [OIVI]
9994
10067
+
Arg
TCT
[ENA]
¡û
>W1911566797
PCPC01000009
Actinomycetota
Arthrobacter sp. MYb51 [PCPC]
128284
128211
-
Arg
TCT
[ENA]
¡û
>W1911567584
PCPR01000019
Actinomycetota
Arthrobacter sp. MYb23 [PCPR]
78225
78152
-
Arg
TCT
[ENA]
¡û
>W1810167368
PJIK01000021
Actinomycetota
Arthrobacter sp. ZGTC131 [PJIK]
3221
3294
+
Arg
TCT
[ENA]
¡û
>W1810167386
PJIL01000003
Actinomycetota
Arthrobacter sp. Y81 [PJIL]
329582
329655
+
Arg
TCT
[ENA]
¡û
>W1810167913
PJIW01000003
Actinomycetota
Arthrobacter sp. 4R501 [PJIW]
261060
261133
+
Arg
TCT
[ENA]
¡û
>W1810171951
PJMB01000002
Actinomycetota
Arthrobacter sp. AFG7.2 [PJMB]
549793
549868
+
Arg
TCT
[ENA]
¡û
>W1810172006
PJMC01000006
Actinomycetota
Arthrobacter sp. AFG20 [PJMC]
35993
35920
-
Arg
TCT
[ENA]
¡û
>W1810424206
PYUI01000031
Actinomycetota
Arthrobacter sp. H-02-3 LBUM149 [PYUI]
2746
2819
+
Arg
TCT
[ENA]
¡û
>W1810474978
QAIQ01000527
Actinomycetota
Arthrobacter sp. HMWF013 [QAIQ]
1350
1277
-
Arg
TCT
[ENA]
¡û
>W1810676830
QKMG01000015
Actinomycetota
Paenarthrobacter nicotinovorans 25_8 [QKMG]
45702
45629
-
Arg
TCT
[ENA]
¡û
>W1810695573
QLNP01000103
Actinomycetota
Arthrobacter globiformis mrc11 [QLNP]
26859
26786
-
Arg
TCT
[ENA]
¡û
>W1810707068
QMKP01000028
Actinomycetota
Arthrobacter sp. AQ5-06 [QMKP]
3429
3504
+
Arg
TCT
[ENA]
¡û
>W1510018498
BBUD01000196
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
478
405
-
Arg
TCT
[ENA]
¡û
>W1510641781
CVLG01000002
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
227029
226954
-
Arg
TCT
[ENA]
¡û
>W1511319631
JPZK01000027
Actinomycetota
Arthrobacter sp. MWB30 [JPZK]
226870
226795
-
Arg
TCT
[ENA]
¡û
>W1511523730
JYCN01000018
Actinomycetota
Arthrobacter sp. SPG23 [JYCN]
380839
380914
+
Arg
TCT
[ENA]
¡û
>W1511685677
LFQH01000026
Actinomycetota
Arthrobacter sp. ZBG10 [LFQH]
29436
29509
+
Arg
TCT
[ENA]
¡û
>C161001327
AP014719
Actinomycetota
Arthrobacter sp. Hiyo8 [AP014719]
4301320
4301247
-
Arg
TCT
-
¡û
>C161060737
CP013747
Actinomycetota
Pseudarthrobacter sulfonivorans Ar51 [CP013747]
4327684
4327611
-
Arg
TCT
[Ensembl]
¡û
>W121086841
AKKK01000062
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
63526
63451
-
Arg
TCT
[ENA]
¡û
>W1610041998
BAXI01000393
Actinomycetota
Nesterenkonia sp. JCM 19054 [BAXI]
1845
1918
+
Arg
TCT
[ENA]
¡û
>W1610081885
BDDW01000003
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
407410
407335
-
Arg
TCT
[ENA]
¡û
>C131002328
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
2817675
2817602
-
Arg
TCT
[Ensembl]
¡û
>W1610527141
JPWK01000035
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
26487
26562
+
Arg
TCT
[ENA]
¡û
>W1610734383
LMLR01000011
Actinomycetota
Arthrobacter sp. Leaf69 [LMLR]
353361
353436
+
Arg
TCT
[ENA]
¡û
>W1610737938
LMON01000001
Actinomycetota
Arthrobacter sp. Leaf145 [LMON]
1049448
1049523
+
Arg
TCT
[ENA]
¡û
>W1610738649
LMPC01000023
Actinomycetota
Arthrobacter sp. Leaf337 [LMPC]
250097
250172
+
Arg
TCT
[ENA]
¡û
>W1610742355
LMSB01000005
Actinomycetota
Arthrobacter sp. Soil736 [LMSB]
93706
93781
+
Arg
TCT
[ENA]
¡û
>W1610742641
LMSG01000001
Actinomycetota
Arthrobacter sp. Soil762 [LMSG]
490112
490187
+
Arg
TCT
[ENA]
¡û
>W1610742713
LMSH01000002
Actinomycetota
Arthrobacter sp. Soil763 [LMSH]
1221640
1221567
-
Arg
TCT
[ENA]
¡û
>W1610774361
LNUT01000005
Actinomycetota
Arthrobacter sp. EPSL27 [LNUT]
337518
337445
-
Arg
TCT
[ENA]
¡û
>W1610774446
LNUV01000004
Actinomycetota
Arthrobacter sp. EpRS71 [LNUV]
298561
298636
+
Arg
TCT
[ENA]
¡û
>W1610850413
LQAP01000015
Actinomycetota
Arthrobacter sp. B6 [LQAP]
142411
142486
+
Arg
TCT
[ENA]
¡û
>W1610989945
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
2676970
2677045
+
Arg
TCT
[ENA]
¡û
>W1710039092
BAXI01000393
Actinomycetota
Nesterenkonia sp. JCM 19054 [BAXI]
1845
1918
+
Arg
TCT
[ENA]
¡û
>W1710080600
BDDW01000003
Actinomycetota
Paenarthrobacter nicotinovorans [BDDW]
407410
407335
-
Arg
TCT
[ENA]
¡û
>W1710508528
FMWE01000010
Actinomycetota
Arthrobacter sp. UNCCL28 [FMWE]
85877
85802
-
Arg
TCT
[ENA]
¡û
>W1710521076
FNGC01000006
Actinomycetota
Arthrobacter sp. ok362 [FNGC]
134148
134073
-
Arg
TCT
[ENA]
¡û
>W1710521118
FNGD01000004
Actinomycetota
Arthrobacter sp. ov407 [FNGD]
254930
255005
+
Arg
TCT
[ENA]
¡û
>W1710525670
FNJS01000017
Actinomycetota
Arthrobacter sp. ok909 [FNJS]
78284
78359
+
Arg
TCT
[ENA]
¡û
>W1710529002
FNNR01000003
Actinomycetota
Arthrobacter sp. cf158 [FNNR]
8722
8797
+
Arg
TCT
[ENA]
¡û
>W1710541460
FNYI01000010
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
88097
88022
-
Arg
TCT
[ENA]
¡û
>W1710577619
FPAY01000002
Actinomycetota
Arthrobacter sp. ov118 [FPAY]
177958
177883
-
Arg
TCT
[ENA]
¡û
>W1710603450
FUZB01000010
Actinomycetota
Arthrobacter sp. 31Cvi3.1E [FUZB]
29158
29231
+
Arg
TCT
[ENA]
¡û
>W1710603539
FUZD01000017
Actinomycetota
Arthrobacter sp. 49Tsu3.1M3 [FUZD]
33298
33373
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK