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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240095 (111 seq.)
>W1711222667
LXSG01000007
Betaproteobacteria
Eikenella corrodens [LXSG]
52647
52571
-
Gln
TTG
[ENA]
¡û
>W1711223078
LXSP01000002
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
366260
366336
+
Gln
TTG
[ENA]
¡û
>W1711223269
LXST01000006
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
14409
14333
-
Gln
TTG
[ENA]
¡û
>WENV180732046
ODGW01086601
[ODGW] human metagenome; G_DNA_Supragingival plaque
192
116
-
Gln
TTG
[ENA]
¢þ
>WENV180750704
ODHS01006113
[ODHS] human metagenome; G_DNA_Supragingival plaque
1517
1441
-
Gln
TTG
[ENA]
¢þ
>WENV180759773
ODHY01148661
[ODHY] human metagenome; G_DNA_Buccal mucosa
146
70
-
Gln
TTG
[ENA]
¢þ
>WENV180765012
ODIB01011640
[ODIB] human metagenome; G_DNA_Supragingival plaque
1041
1117
+
Gln
TTG
[ENA]
¢þ
>WENV180776957
ODIK01258682
[ODIK] human metagenome; G_DNA_Tongue dorsum
146
70
-
Gln
TTG
[ENA]
¢þ
>WENV180782364
ODIP01119679
[ODIP] human metagenome; G_DNA_Supragingival plaque
146
70
-
Gln
TTG
[ENA]
¢þ
>WENV180787536
ODIS01008012
[ODIS] human metagenome; G_DNA_Supragingival plaque
2425
2349
-
Gln
TTG
[ENA]
¢þ
>WENV180787537
ODIS01008012
[ODIS] human metagenome; G_DNA_Supragingival plaque
2333
2257
-
Gln
TTG
[ENA]
¢þ
>WENV180804441
ODJG01002934
[ODJG] human metagenome; G_DNA_Supragingival plaque
4783
4859
+
Gln
TTG
[ENA]
¢þ
>WENV180804442
ODJG01002934
[ODJG] human metagenome; G_DNA_Supragingival plaque
4875
4951
+
Gln
TTG
[ENA]
¢þ
>WENV180814333
ODJO01013608
[ODJO] human metagenome; G_DNA_Supragingival plaque
831
755
-
Gln
TTG
[ENA]
¢þ
>WENV180814334
ODJO01013608
[ODJO] human metagenome; G_DNA_Supragingival plaque
739
663
-
Gln
TTG
[ENA]
¢þ
>WENV180814479
ODJO01018609
[ODJO] human metagenome; G_DNA_Supragingival plaque
2
78
+
Gln
TTG
[ENA]
¢þ
>WENV180823773
ODJW01164973
[ODJW] human metagenome; G_DNA_Supragingival plaque
124
200
+
Gln
TTG
[ENA]
¢þ
>WENV180824969
ODJX01143360
[ODJX] human metagenome; G_DNA_Supragingival plaque
2
78
+
Gln
TTG
[ENA]
¢þ
>WENV180824974
ODJX01143697
[ODJX] human metagenome; G_DNA_Supragingival plaque
2
78
+
Gln
TTG
[ENA]
¢þ
>WENV180833032
ODKC01011927
[ODKC] human metagenome; G_DNA_Supragingival plaque
9
85
+
Gln
TTG
[ENA]
¢þ
>WENV180833123
ODKC01014992
[ODKC] human metagenome; G_DNA_Supragingival plaque
2001
1925
-
Gln
TTG
[ENA]
¢þ
>WENV180833866
ODKD01000553
[ODKD] human metagenome; G_DNA_Supragingival plaque
2191
2267
+
Gln
TTG
[ENA]
¢þ
>WENV180833867
ODKD01000553
[ODKD] human metagenome; G_DNA_Supragingival plaque
2282
2358
+
Gln
TTG
[ENA]
¢þ
>WENV180836267
ODKE01082713
[ODKE] human metagenome; G_DNA_Supragingival plaque
293
369
+
Gln
TTG
[ENA]
¢þ
>WENV180844616
ODKN01246944
[ODKN] human metagenome; G_DNA_Supragingival plaque
79
155
+
Gln
TTG
[ENA]
¢þ
>WENV180846922
ODKT01029596
[ODKT] human metagenome; G_DNA_Supragingival plaque
261
185
-
Gln
TTG
[ENA]
¢þ
>WENV180846923
ODKT01029596
[ODKT] human metagenome; G_DNA_Supragingival plaque
169
93
-
Gln
TTG
[ENA]
¢þ
>WENV180860508
ODLD01123050
[ODLD] human metagenome; G_DNA_Supragingival plaque
111
187
+
Gln
TTG
[ENA]
¢þ
>WENV180866942
ODLJ01184026
[ODLJ] human metagenome; G_DNA_Tongue dorsum
70
146
+
Gln
TTG
[ENA]
¢þ
>WENV180874104
ODLP01152366
[ODLP] human metagenome; G_DNA_Tongue dorsum
97
21
-
Gln
TTG
[ENA]
¢þ
>WENV180881157
ODLZ01192470
[ODLZ] human metagenome; G_DNA_Tongue dorsum
211
135
-
Gln
TTG
[ENA]
¢þ
>WENV180888913
ODMN01005954
[ODMN] human metagenome; G_DNA_Supragingival plaque
2068
1992
-
Gln
TTG
[ENA]
¢þ
>WENV180888914
ODMN01005954
[ODMN] human metagenome; G_DNA_Supragingival plaque
1976
1900
-
Gln
TTG
[ENA]
¢þ
>WENV180891809
ODMQ01016373
[ODMQ] human metagenome; G_DNA_Supragingival plaque
68
144
+
Gln
TTG
[ENA]
¢þ
>WENV180933506
ODTR01000349
[ODTR] human metagenome; G_DNA_Supragingival plaque
21842
21766
-
Gln
TTG
[ENA]
¢þ
>WENV180933507
ODTR01000349
[ODTR] human metagenome; G_DNA_Supragingival plaque
21750
21674
-
Gln
TTG
[ENA]
¢þ
>WENV180934358
ODTR01137237
[ODTR] human metagenome; G_DNA_Supragingival plaque
77
1
-
Gln
TTG
[ENA]
¢þ
>WENV180935112
ODTS01060684
[ODTS] human metagenome; G_DNA_Subgingival plaque
226
302
+
Gln
TTG
[ENA]
¢þ
>WENV180944265
ODUC01011915
[ODUC] human metagenome; G_DNA_Supragingival plaque
1950
1874
-
Gln
TTG
[ENA]
¢þ
>WENV180958069
ODUL01000270
[ODUL] human metagenome; G_DNA_Supragingival plaque
8605
8681
+
Gln
TTG
[ENA]
¢þ
>WENV180958070
ODUL01000270
[ODUL] human metagenome; G_DNA_Supragingival plaque
8697
8773
+
Gln
TTG
[ENA]
¢þ
>WENV180980665
ODVE01000988
[ODVE] human metagenome; G_DNA_Supragingival plaque
4301
4377
+
Gln
TTG
[ENA]
¢þ
>WENV180983282
ODVF01006716
[ODVF] human metagenome; G_DNA_Supragingival plaque
2161
2237
+
Gln
TTG
[ENA]
¢þ
>WENV180983283
ODVF01006716
[ODVF] human metagenome; G_DNA_Supragingival plaque
2253
2329
+
Gln
TTG
[ENA]
¢þ
>WENV181001997
ODVW01091236
[ODVW] human metagenome; G_DNA_Buccal mucosa
145
69
-
Gln
TTG
[ENA]
¢þ
>WENV181003046
ODVX01004071
[ODVX] human metagenome; G_DNA_Supragingival plaque
2746
2822
+
Gln
TTG
[ENA]
¢þ
>WENV181003254
ODVX01007417
[ODVX] human metagenome; G_DNA_Supragingival plaque
740
816
+
Gln
TTG
[ENA]
¢þ
>WENV181009856
ODWE01263676
[ODWE] human metagenome; G_DNA_Supragingival plaque
125
49
-
Gln
TTG
[ENA]
¢þ
>WENV181009901
ODWE01280013
[ODWE] human metagenome; G_DNA_Supragingival plaque
78
2
-
Gln
TTG
[ENA]
¢þ
>WENV181019107
ODWU01000631
[ODWU] human metagenome; G_DNA_Supragingival plaque
13074
13150
+
Gln
TTG
[ENA]
¢þ
>WENV181042159
ODXS01215759
[ODXS] human metagenome; G_DNA_Tongue dorsum
146
70
-
Gln
TTG
[ENA]
¢þ
>WENV181050410
ODYD01017708
[ODYD] human metagenome; G_DNA_Supragingival plaque
126
50
-
Gln
TTG
[ENA]
¢þ
>WENV181050852
ODYD01075366
[ODYD] human metagenome; G_DNA_Supragingival plaque
69
145
+
Gln
TTG
[ENA]
¢þ
>WENV181064688
ODYP01071484
[ODYP] human metagenome; G_DNA_Supragingival plaque
70
146
+
Gln
TTG
[ENA]
¢þ
>WENV181070234
OEAE01000496
[OEAE] human metagenome; G_DNA_Supragingival plaque
2753
2829
+
Gln
TTG
[ENA]
¢þ
>WENV181076413
OEAP01004977
[OEAP] human metagenome; G_DNA_Supragingival plaque
3976
4052
+
Gln
TTG
[ENA]
¢þ
>WENV181076414
OEAP01004977
[OEAP] human metagenome; G_DNA_Supragingival plaque
4067
4143
+
Gln
TTG
[ENA]
¢þ
>WENV181080311
OEAS01039414
[OEAS] human metagenome; G_DNA_Supragingival plaque
1596
1672
+
Gln
TTG
[ENA]
¢þ
>WENV181082420
OEAT01024737
[OEAT] human metagenome; G_DNA_Supragingival plaque
129
205
+
Gln
TTG
[ENA]
¢þ
>WENV181083026
OEAV01001847
[OEAV] human metagenome; G_DNA_Supragingival plaque
7298
7222
-
Gln
TTG
[ENA]
¢þ
>WENV181083027
OEAV01001847
[OEAV] human metagenome; G_DNA_Supragingival plaque
7207
7131
-
Gln
TTG
[ENA]
¢þ
>WENV181121722
OEFL01016374
[OEFL] human metagenome; G_DNA_Supragingival plaque
1497
1573
+
Gln
TTG
[ENA]
¢þ
>WENV181123715
OEFQ01000512
[OEFQ] human metagenome; G_DNA_Supragingival plaque
2735
2811
+
Gln
TTG
[ENA]
¢þ
>WENV181123716
OEFQ01000512
[OEFQ] human metagenome; G_DNA_Supragingival plaque
2827
2903
+
Gln
TTG
[ENA]
¢þ
>WENV181137186
OEGJ01000617
[OEGJ] human metagenome; G_DNA_Supragingival plaque
13235
13159
-
Gln
TTG
[ENA]
¢þ
>WENV181137910
OEGJ01041148
[OEGJ] human metagenome; G_DNA_Supragingival plaque
598
674
+
Gln
TTG
[ENA]
¢þ
>WENV181142188
OEGT01135840
[OEGT] human metagenome; G_DNA_Throat
125
49
-
Gln
TTG
[ENA]
¢þ
>WENV181143187
OEHM01000204
[OEHM] human metagenome; G_DNA_Supragingival plaque
23591
23667
+
Gln
TTG
[ENA]
¢þ
>WENV181143188
OEHM01000204
[OEHM] human metagenome; G_DNA_Supragingival plaque
23682
23758
+
Gln
TTG
[ENA]
¢þ
>WENV181152471
OEIA01001677
[OEIA] human metagenome; G_DNA_Supragingival plaque
7739
7663
-
Gln
TTG
[ENA]
¢þ
>WENV181152472
OEIA01001677
[OEIA] human metagenome; G_DNA_Supragingival plaque
7648
7572
-
Gln
TTG
[ENA]
¢þ
>WENV181158135
OEIG01167429
[OEIG] human metagenome; G_DNA_Hard palate
18
94
+
Gln
TTG
[ENA]
¢þ
>WENV181177935
OEJS01031436
[OEJS] human metagenome; G_DNA_Supragingival plaque
139
215
+
Gln
TTG
[ENA]
¢þ
>WENV181181919
OEJV01000675
[OEJV] human metagenome; G_DNA_Supragingival plaque
2746
2822
+
Gln
TTG
[ENA]
¢þ
>C181067614
CP022527
Betaproteobacteria
Neisseria sp. KEM232 [CP022527]
982764
982840
+
Gln
TTG
-
¡û
>C181198437
CP031255
Betaproteobacteria
Neisseria elongata M15910 [CP031255]
1741689
1741613
-
Gln
TTG
-
¡û
>C181198438
CP031255
Betaproteobacteria
Neisseria elongata M15910 [CP031255]
1741598
1741522
-
Gln
TTG
-
¡û
>C181213199
LS483435
Betaproteobacteria
Neisseria elongata subsp. glycolytica NCTC11050 [LS483435]
1926948
1926872
-
Gln
TTG
-
¡û
>C181213200
LS483435
Betaproteobacteria
Neisseria elongata subsp. glycolytica NCTC11050 [LS483435]
1926856
1926780
-
Gln
TTG
-
¡û
>C191205932
LR134313
Betaproteobacteria
Neisseria canis NCTC10296 [LR134313]
268310
268234
-
Gln
TTG
-
¡û
>C191205933
LR134313
Betaproteobacteria
Neisseria canis NCTC10296 [LR134313]
268223
268147
-
Gln
TTG
-
¡û
>W1810227005
POXA01000008
Betaproteobacteria
Neisseria wadsworthii C2008000421 [POXA]
37167
37091
-
Gln
TTG
[ENA]
¡û
>W1810227006
POXA01000008
Betaproteobacteria
Neisseria wadsworthii C2008000421 [POXA]
37080
37004
-
Gln
TTG
[ENA]
¡û
>W1810227374
POXH01000008
Betaproteobacteria
Neisseria elongata C2010010207 [POXH]
32958
33034
+
Gln
TTG
[ENA]
¡û
>W1810227375
POXH01000008
Betaproteobacteria
Neisseria elongata C2010010207 [POXH]
33049
33125
+
Gln
TTG
[ENA]
¡û
>W1810227454
POXJ01000002
Betaproteobacteria
Neisseria elongata C2011003085 [POXJ]
199707
199631
-
Gln
TTG
[ENA]
¡û
>W1810227455
POXJ01000002
Betaproteobacteria
Neisseria elongata C2011003085 [POXJ]
199616
199540
-
Gln
TTG
[ENA]
¡û
>W1810228106
POXV01000017
Betaproteobacteria
Neisseria elongata C2013018262 [POXV]
29836
29760
-
Gln
TTG
[ENA]
¡û
>W1810228107
POXV01000017
Betaproteobacteria
Neisseria elongata C2013018262 [POXV]
29744
29668
-
Gln
TTG
[ENA]
¡û
>W1810228108
POXV01000017
Betaproteobacteria
Neisseria elongata C2013018262 [POXV]
29652
29576
-
Gln
TTG
[ENA]
¡û
>W1810228229
POXY01000001
Betaproteobacteria
Neisseria elongata C2014003241 [POXY]
182790
182866
+
Gln
TTG
[ENA]
¡û
>W1810228230
POXY01000001
Betaproteobacteria
Neisseria elongata C2014003241 [POXY]
182882
182958
+
Gln
TTG
[ENA]
¡û
>C151033130
CP007726
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [CP007726]
1500340
1500264
-
Gln
TTG
[Ensembl]
¡û
>C151033131
CP007726
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [CP007726]
1500248
1500172
-
Gln
TTG
[Ensembl]
¡û
>W10109801
ADBF01000030
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
91339
91263
-
Gln
TTG
[ENA]
¡û
>W10109824
ADBF01000254
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
78138
78214
+
Gln
TTG
[ENA]
¡û
>W11112188
ADBF01000030
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
91339
91263
-
Gln
TTG
[ENA]
¡û
>W11112211
ADBF01000254
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
78138
78214
+
Gln
TTG
[ENA]
¡û
>W1511456089
JVHH01000066
Betaproteobacteria
Neisseria elongata 431_NMEN [JVHH]
259650
259574
-
Gln
TTG
[ENA]
¡û
>W1511456090
JVHH01000066
Betaproteobacteria
Neisseria elongata 431_NMEN [JVHH]
259559
259483
-
Gln
TTG
[ENA]
¡û
>W1511457696
JVIM01000070
Betaproteobacteria
Neisseria elongata 404_NMEN [JVIM]
31865
31941
+
Gln
TTG
[ENA]
¡û
>W1511457697
JVIM01000070
Betaproteobacteria
Neisseria elongata 404_NMEN [JVIM]
31956
32032
+
Gln
TTG
[ENA]
¡û
>W1511469708
JVVT01000108
Betaproteobacteria
Neisseria elongata 1279_NMEN [JVVT]
154439
154363
-
Gln
TTG
[ENA]
¡û
>W1610617692
LGYH01000001
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
106771
106847
+
Gln
TTG
[ENA]
¡û
>W1610617693
LGYH01000001
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
106858
106934
+
Gln
TTG
[ENA]
¡û
>W1611007080
LXSG01000007
Betaproteobacteria
Eikenella corrodens [LXSG]
52647
52571
-
Gln
TTG
[ENA]
¡û
>W1611007491
LXSP01000002
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
366260
366336
+
Gln
TTG
[ENA]
¡û
>W1611007682
LXST01000006
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
14409
14333
-
Gln
TTG
[ENA]
¡û
>W1710563497
FOPS01000004
Betaproteobacteria
Neisseria elongata subsp. elongata [FOPS]
81253
81329
+
Gln
TTG
[ENA]
¡û
>W1710743554
LGYH01000001
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
106771
106847
+
Gln
TTG
[ENA]
¡û
>W1710743555
LGYH01000001
Betaproteobacteria
Neisseria sp. 83E34 [LGYH]
106858
106934
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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