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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240120 (48 seq.)
>W1710859882
LMCL01000001
Alphaproteobacteria
Aminobacter sp. DSM 101952 Root100 [LMCL]
232876
232801
-
Lys
CTT
[ENA]
¡û
>W1710864426
LMFW01000001
Alphaproteobacteria
Mesorhizobium sp. Root1471 [LMFW]
1570674
1570749
+
Lys
CTT
[ENA]
¡û
>W1710864632
LMGA01000001
Alphaproteobacteria
Mesorhizobium sp. Root554 [LMGA]
1570227
1570302
+
Lys
CTT
[ENA]
¡û
>W1710865068
LMGJ01000035
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
177010
177085
+
Lys
CTT
[ENA]
¡û
>W1711257324
LYTO01000373
Alphaproteobacteria
Mesorhizobium sp. AA22 [LYTO]
192371
192296
-
Lys
CTT
[ENA]
¡û
>W1711385437
MEEF01000042
Alphaproteobacteria
Mesorhizobium sp. SCN 65-20 [MEEF]
18416
18341
-
Lys
CTT
[ENA]
¡û
>W1711613480
MOYL01000003
Alphaproteobacteria
Pseudochrobactrum sp. B5 [MOYL]
321228
321153
-
Lys
CTT
[ENA]
¡û
>W1711694763
MSIG01000012
Alphaproteobacteria
Mongoliimonas terrestris MIMtkB18 [MSIG]
45841
45766
-
Lys
CTT
[ENA]
¡û
>W131167088
ARCZ01000001
Alphaproteobacteria
Hoeflea sp. 108 [ARCZ]
2979451
2979376
-
Lys
CTT
[ENA]
¡û
>W131167089
ARCZ01000001
Alphaproteobacteria
Hoeflea sp. 108 [ARCZ]
2979142
2979067
-
Lys
CTT
[ENA]
¡û
>W141053229
ANNO01000098
Alphaproteobacteria
Pseudochrobactrum sp. AO18b [ANNO]
2669
2744
+
Lys
CTT
[ENA]
¡û
>W141073771
ASTL01000008
Alphaproteobacteria
Mesorhizobium ciceri ca181 [ASTL]
190289
190214
-
Lys
CTT
[ENA]
¡û
>WENV181167416
OEIU01027616
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
626
701
+
Lys
CTT
[ENA]
¢þ
>W141199182
AYWU01000006
Alphaproteobacteria
Mesorhizobium sp. L48C026A00 [AYWU]
417627
417702
+
Lys
CTT
[ENA]
¡û
>W141216495
AZUX01000037
Alphaproteobacteria
Mesorhizobium sp. WSM2561 [AZUX]
47874
47949
+
Lys
CTT
[ENA]
¡û
>ENV08000292
ABLY01539987
viral fraction from Arctic Ocean
85
10
-
Lys
CTT
[ENA]
¡û
>WENV170009869
APMI01004364
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9350
9425
+
Lys
CTT
[ENA]
¢þ
>WENV170011866
APMI01097810
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1475
1400
-
Lys
CTT
[ENA]
¢þ
>WENV170011867
APMI01097810
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1166
1091
-
Lys
CTT
[ENA]
¢þ
>WENV170553793
CXWK01031322
[CXWK] wastewater metagenome; activated sludge
2015
2090
+
Lys
CTT
[ENA]
¢þ
>C181129965
CP026265
Alphaproteobacteria
Aminobacter sp. MSH1 [CP026265]
2915870
2915945
+
Lys
CTT
-
¡û
>C181170981
CP028968
Alphaproteobacteria
Aminobacter sp. MSH1 [CP028968]
2915535
2915610
+
Lys
CTT
-
¡û
>C191000400
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
4614823
4614898
+
Lys
CTT
-
¡û
>W1910341136
FTPD01000067
Alphaproteobacteria
Mesorhizobium prunaredense STM 4891 [FTPD]
511806
511881
+
Lys
CTT
[ENA]
¡û
>W1910374402
FUIG01000103
Alphaproteobacteria
Mesorhizobium delmotii STM 462 [FUIG]
118077
118002
-
Lys
CTT
[ENA]
¡û
>W1911156011
NPKH01000020
Alphaproteobacteria
Mesorhizobium wenxiniae WYCCWR 10195 [NPKH]
98847
98772
-
Lys
CTT
[ENA]
¡û
>W1911156044
NPKI01000009
Alphaproteobacteria
Mesorhizobium mediterraneum USDA 3392 [NPKI]
128831
128906
+
Lys
CTT
[ENA]
¡û
>W1911156129
NPKJ01000060
Alphaproteobacteria
Mesorhizobium temperatum SDW018 [NPKJ]
301763
301688
-
Lys
CTT
[ENA]
¡û
>SRA1000220
SRR001037.116516
Marine Viruses from Arctic Ocean (SRP000129)
85
10
-
Lys
CTT
[SRA]
>W1911810727
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
2190975
2191050
+
Lys
CTT
[ENA]
¡û
>W1810192908
PKMZ01000002
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
452619
452544
-
Lys
CTT
[ENA]
¡û
>W1810346521
PVBR01000002
Alphaproteobacteria
Phyllobacterium phragmitis 1N-3 [PVBR]
94197
94122
-
Lys
CTT
[ENA]
¡û
>W1810390383
PXYK01000025
Alphaproteobacteria
Mesorhizobium ephedrae 6GN30 [PXYK]
32525
32600
+
Lys
CTT
[ENA]
¡û
>W1810596918
QGGX01000005
Alphaproteobacteria
Aminobacter sp. AP02 [QGGX]
318810
318885
+
Lys
CTT
[ENA]
¡û
>W1810672126
QJTF01000002
Alphaproteobacteria
Phyllobacterium leguminum ORS 1419 [QJTF]
192023
191948
-
Lys
CTT
[ENA]
¡û
>W1810720469
QNRH01000004
Alphaproteobacteria
Pseudochrobactrum asaccharolyticum DSM 25619 [QNRH]
372662
372587
-
Lys
CTT
[ENA]
¡û
>W1810750633
QOZG01000001
Alphaproteobacteria
Phyllobacterium salinisoli LLAN61 [QOZG]
215278
215203
-
Lys
CTT
[ENA]
¡û
>C161081603
CP015005
Alphaproteobacteria
Aminobacter aminovorans KCTC 2477 [CP015005]
2970128
2970203
+
Lys
CTT
[Ensembl]
¡û
>C161081604
CP015005
Alphaproteobacteria
Aminobacter aminovorans KCTC 2477 [CP015005]
2970414
2970489
+
Lys
CTT
[Ensembl]
¡û
>W121023492
AHAM01000138
Alphaproteobacteria
Mesorhizobium alhagi CCNWXJ12-2 [AHAM]
3710
3635
-
Lys
CTT
[ENA]
¡û
>W1610722228
LMCL01000001
Alphaproteobacteria
Aminobacter sp. DSM 101952 Root100 [LMCL]
232876
232801
-
Lys
CTT
[ENA]
¡û
>W1610726772
LMFW01000001
Alphaproteobacteria
Mesorhizobium sp. Root1471 [LMFW]
1570674
1570749
+
Lys
CTT
[ENA]
¡û
>W1610726978
LMGA01000001
Alphaproteobacteria
Mesorhizobium sp. Root554 [LMGA]
1570227
1570302
+
Lys
CTT
[ENA]
¡û
>W1610727414
LMGJ01000035
Alphaproteobacteria
Mesorhizobium sp. Root157 [LMGJ]
177010
177085
+
Lys
CTT
[ENA]
¡û
>W1611020346
LYTO01000373
Alphaproteobacteria
Mesorhizobium sp. AA22 [LYTO]
192371
192296
-
Lys
CTT
[ENA]
¡û
>W1710518691
FNEE01000007
Alphaproteobacteria
Mesorhizobium muleiense [FNEE]
147227
147302
+
Lys
CTT
[ENA]
¡û
>W1710578138
FPBI01000010
Alphaproteobacteria
Mesorhizobium sp. YR577 [FPBI]
156583
156658
+
Lys
CTT
[ENA]
¡û
>W1710608891
FXBL01000004
Alphaproteobacteria
Mesorhizobium australicum [FXBL]
2846005
2846080
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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