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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240388 (18 seq.)
>A171001092
CP001857
Euryarchaeota
Archaeoglobus profundus DSM 5631 [CP001857]
1096150
1096078
-
Val
CAC
-
¡û
>A171002098
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
940727
940800
+
Val
CAC
-
¡û
>A171003683
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
344854
344782
-
Val
CAC
-
¡û
>A171003843
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
211861
211789
-
Val
CAC
-
¡û
>WENV180287836
OBIL01006579
[OBIL] metagenome; hydrothermal vent
863
935
+
Val
CAC
[ENA]
¢þ
>WENV181213545
OFBV01007647
[OFBV] metagenome; hydrothermal vent
513
585
+
Val
CAC
[ENA]
¢þ
>WENV181214462
OFBY01000358
[OFBY] metagenome; hydrothermal vent
4766
4838
+
Val
CAC
[ENA]
¢þ
>WENV181215004
OFBZ01000863
[OFBZ] metagenome; hydrothermal vent
2024
1952
-
Val
CAC
[ENA]
¢þ
>WENV181216635
OFCC01012542
[OFCC] metagenome; hydrothermal vent
61
133
+
Val
CAC
[ENA]
¢þ
>WENV181409098
OGCH01050003
[OGCH] hot springs metagenome; hot springs
401
329
-
Val
CAC
[ENA]
¢þ
>At0627
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
235571
235499
-
Val
CAC
[Ensembl]
¡û
>WENV170675787
LDZQ01000576
[LDZQ] terrestrial metagenome; oil reservoir sample I2
31245
31317
+
Val
CAC
[ENA]
¢þ
>WENV170676370
LDZR01002360
[LDZR] terrestrial metagenome; oil reservoir sample K2
55735
55663
-
Val
CAC
[ENA]
¢þ
>WENV170779146
LZCG01001747
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
1643
1570
-
Val
CAC
[ENA]
¢þ
>WENV170779240
LZQN01000039
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
727
654
-
Val
CAC
[ENA]
¢þ
>W1910200349
FJNF01000054
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
454
382
-
Val
CAC
[ENA]
¡û
>W1610612314
LGEQ01000003
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
31245
31317
+
Val
CAC
[ENA]
¡û
>W1610612588
LGEX01000002
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
55735
55663
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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