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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240396 (18 seq.)
>A171002114
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
1456421
1456347
-
Thr
TGT
-
¡û
>A171003830
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
1856482
1856410
-
Thr
TGT
-
¡û
>A171003833
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
1504789
1504715
-
Thr
CGT
-
¡û
>WENV181409018
OGCH01035713
[OGCH] hot springs metagenome; hot springs
289
215
-
Thr
TGT
[ENA]
¢þ
>At0639
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
1345381
1345309
-
Thr
CGT
[Ensembl]
¡û
>At0642
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
1694428
1694356
-
Thr
TGT
[Ensembl]
¡û
>WENV170675797
LDZQ01000580
[LDZQ] terrestrial metagenome; oil reservoir sample I2
49162
49236
+
Thr
CGT
[ENA]
¢þ
>WENV170675805
LDZQ01000585
[LDZQ] terrestrial metagenome; oil reservoir sample I2
41574
41646
+
Thr
TGT
[ENA]
¢þ
>WENV170676376
LDZR01002363
[LDZR] terrestrial metagenome; oil reservoir sample K2
512
440
-
Thr
TGT
[ENA]
¢þ
>WENV170676389
LDZR01002380
[LDZR] terrestrial metagenome; oil reservoir sample K2
1843
1769
-
Thr
CGT
[ENA]
¢þ
>WENV170779152
LZCG01002291
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
402
474
+
Thr
TGT
[ENA]
¢þ
>WENV170779265
LZQN01000096
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
17596
17668
+
Thr
TGT
[ENA]
¢þ
>W1910200372
FJNF01000155
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
18367
18293
-
Thr
CGT
[ENA]
¡û
>W1910200374
FJNF01000180
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
525
453
-
Thr
TGT
[ENA]
¡û
>W1610612324
LGEQ01000007
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
49162
49236
+
Thr
CGT
[ENA]
¡û
>W1610612332
LGEQ01000012
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
41574
41646
+
Thr
TGT
[ENA]
¡û
>W1610612594
LGEX01000005
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
512
440
-
Thr
TGT
[ENA]
¡û
>W1610612607
LGEX01000022
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
1843
1769
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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