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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240413 (84 seq.)
>W131052004
AMYG01000065
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
849
774
-
Lys
TTT
[ENA]
¡û
>W131052015
AMYG01000069
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
6093
6168
+
Lys
TTT
[ENA]
¡û
>W131167552
ARDJ01000009
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
4707
4782
+
Lys
TTT
[ENA]
¡û
>W131167592
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
90449
90374
-
Lys
TTT
[ENA]
¡û
>C025867
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
626877
626802
-
Lys
TTT
[Ensembl]
¡û
>w018979
AATV01000029
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
22746
22669
-
Lys
TTT
[ENA]
¡û
>w010181
AAKQ01000005
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
72632
72555
-
Lys
TTT
[ENA]
¡û
>W141092597
AVAF01000098
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
8634
8559
-
Lys
TTT
[ENA]
¡û
>W141092609
AVAF01000122
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
115205
115280
+
Lys
TTT
[ENA]
¡û
>WENV181226122
OFDK01000062
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
48828
48903
+
Lys
TTT
[ENA]
¢þ
>WENV181226269
OFDK01000480
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
3065
3140
+
Lys
TTT
[ENA]
¢þ
>W141153122
AXDC01000007
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
3187
3262
+
Lys
TTT
[ENA]
¡û
>C08010940
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
574864
574939
+
Lys
TTT
[Ensembl]
¡û
>C08010958
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
932232
932307
+
Lys
TTT
[Ensembl]
¡û
>C08011044
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
461216
461291
+
Lys
TTT
[Ensembl]
¡û
>C08011071
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1717114
1717042
-
Lys
TTT
[Ensembl]
¡û
>W141276474
JADV01000007
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
60522
60597
+
Lys
TTT
[ENA]
¡û
>W141276505
JADV01000026
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
1159
1234
+
Lys
TTT
[ENA]
¡û
>WENV170675629
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
226822
226747
-
Lys
TTT
[ENA]
¢þ
>WENV170675662
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
16768
16693
-
Lys
TTT
[ENA]
¢þ
>WENV170676239
LDZR01001829
[LDZR] terrestrial metagenome; oil reservoir sample K2
1754
1829
+
Lys
TTT
[ENA]
¢þ
>WENV170676264
LDZR01001926
[LDZR] terrestrial metagenome; oil reservoir sample K2
1893
1818
-
Lys
TTT
[ENA]
¢þ
>WENV170676483
LDZS01000031
[LDZS] terrestrial metagenome; oil reservoir sample K3
14195
14120
-
Lys
TTT
[ENA]
¢þ
>WENV170676897
LDZS01003104
[LDZS] terrestrial metagenome; oil reservoir sample K3
2491
2566
+
Lys
TTT
[ENA]
¢þ
>WENV170779382
LZQN01004223
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
676
751
+
Lys
TTT
[ENA]
¢þ
>C191108106
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1165358
1165433
+
Lys
TTT
-
¡û
>C191108128
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2690145
2690070
-
Lys
TTT
-
¡û
>W09112137
ABXP01000101
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
6390
6315
-
Lys
TTT
[ENA]
¡û
>W09133537
ACPF01000036
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
22003
21928
-
Lys
TTT
[ENA]
¡û
>W09133544
ACPF01000038
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
1767
1842
+
Lys
TTT
[ENA]
¡û
>W09134120
ACQZ01000003
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
83028
83103
+
Lys
TTT
[ENA]
¡û
>W09134147
ACQZ01000030
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
21840
21765
-
Lys
TTT
[ENA]
¡û
>W09135064
ACVH01000041
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
536
461
-
Lys
TTT
[ENA]
¡û
>W09135075
ACVH01000067
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
853
928
+
Lys
TTT
[ENA]
¡û
>W09135164
ACVK01000033
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
11917
11992
+
Lys
TTT
[ENA]
¡û
>W09135175
ACVK01000035
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
21162
21087
-
Lys
TTT
[ENA]
¡û
>W09135870
ACXP01000030
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
22001
21926
-
Lys
TTT
[ENA]
¡û
>W09135883
ACXP01000031
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
2750
2825
+
Lys
TTT
[ENA]
¡û
>C151045294
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
602527
602602
+
Lys
TTT
[Ensembl]
¡û
>C151045322
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1875761
1875686
-
Lys
TTT
[Ensembl]
¡û
>W10105943
ACXY01000023
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
35819
35744
-
Lys
TTT
[ENA]
¡û
>W10105960
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
2808
2883
+
Lys
TTT
[ENA]
¡û
>W10120496
ADXD01000040
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
11214
11139
-
Lys
TTT
[ENA]
¡û
>W10120505
ADXD01000058
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
884
809
-
Lys
TTT
[ENA]
¡û
>C10113380
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
650279
650354
+
Lys
TTT
[Ensembl]
¡û
>C10113404
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1986359
1986284
-
Lys
TTT
[Ensembl]
¡û
>C10113434
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
692303
692378
+
Lys
TTT
[Ensembl]
¡û
>C10113460
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1918969
1918894
-
Lys
TTT
[Ensembl]
¡û
>W11108266
ACXY01000023
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
35819
35744
-
Lys
TTT
[ENA]
¡û
>W11108283
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
2808
2883
+
Lys
TTT
[ENA]
¡û
>W1511275083
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
1454090
1454015
-
Lys
TTT
[ENA]
¡û
>W1511275121
JOOI01000003
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
261452
261527
+
Lys
TTT
[ENA]
¡û
>C11122471
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
456632
456707
+
Lys
TTT
[Ensembl]
¡û
>C11122498
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1709327
1709252
-
Lys
TTT
[Ensembl]
¡û
>C11122700
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
614718
614793
+
Lys
TTT
[Ensembl]
¡û
>C11122733
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1982149
1982074
-
Lys
TTT
[Ensembl]
¡û
>C11123231
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
737316
737391
+
Lys
TTT
[Ensembl]
¡û
>C11123257
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2253334
2253259
-
Lys
TTT
[Ensembl]
¡û
>W11127105
ADXD01000040
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
11214
11139
-
Lys
TTT
[ENA]
¡û
>W11127114
ADXD01000058
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
884
809
-
Lys
TTT
[ENA]
¡û
>W11152653
AEYS01000011
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
53921
53846
-
Lys
TTT
[ENA]
¡û
>W11152678
AEYS01000018
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
1401
1326
-
Lys
TTT
[ENA]
¡û
>W121068084
AJUD01000005
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
117443
117368
-
Lys
TTT
[ENA]
¡û
>W121068116
AJUD01000012
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
14946
15021
+
Lys
TTT
[ENA]
¡û
>W1610043658
BAZY01000019
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
5681
5606
-
Lys
TTT
[ENA]
¡û
>W1610043688
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
822
897
+
Lys
TTT
[ENA]
¡û
>W1610612261
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
226822
226747
-
Lys
TTT
[ENA]
¡û
>W1610612294
LGEO01000027
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
16768
16693
-
Lys
TTT
[ENA]
¡û
>W1610612641
LGEY01000021
Bacillota
Caldanaerobacter subterraneus [LGEY]
1754
1829
+
Lys
TTT
[ENA]
¡û
>W1610612666
LGEY01000118
Bacillota
Caldanaerobacter subterraneus [LGEY]
1893
1818
-
Lys
TTT
[ENA]
¡û
>W1610613193
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
2491
2566
+
Lys
TTT
[ENA]
¡û
>W1710040818
BAZY01000019
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
5681
5606
-
Lys
TTT
[ENA]
¡û
>W1710040848
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
822
897
+
Lys
TTT
[ENA]
¡û
>W1710515322
FNBS01000038
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
9650
9725
+
Lys
TTT
[ENA]
¡û
>W1710515343
FNBS01000077
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
1366
1441
+
Lys
TTT
[ENA]
¡û
>W1710560363
FONI01000007
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
6345
6420
+
Lys
TTT
[ENA]
¡û
>W1710560399
FONI01000076
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
929
854
-
Lys
TTT
[ENA]
¡û
>W1710583282
FQUR01000007
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
255630
255705
+
Lys
TTT
[ENA]
¡û
>W1710583296
FQUR01000009
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
205941
205866
-
Lys
TTT
[ENA]
¡û
>W1710733767
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
226822
226747
-
Lys
TTT
[ENA]
¡û
>W1710733800
LGEO01000027
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
16768
16693
-
Lys
TTT
[ENA]
¡û
>W1710733962
LGEY01000021
Bacillota
Caldanaerobacter subterraneus [LGEY]
1754
1829
+
Lys
TTT
[ENA]
¡û
>W1710733987
LGEY01000118
Bacillota
Caldanaerobacter subterraneus [LGEY]
1893
1818
-
Lys
TTT
[ENA]
¡û
>W1710734400
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
2491
2566
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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