This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240414 (44 seq.)
>W131051995
AMYG01000055
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
5755
5680
-
Ala
GGC
[ENA]
¡û
>W131167560
ARDJ01000012
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
74958
75033
+
Ala
GGC
[ENA]
¡û
>C025830
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
989990
990065
+
Ala
GGC
[Ensembl]
¡û
>w019002
AATV01000075
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
1544
1467
-
Ala
GGC
[ENA]
¡û
>w010196
AAKQ01000025
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
9555
9632
+
Ala
GGC
[ENA]
¡û
>W141092611
AVAF01000130
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
8903
8828
-
Ala
GGC
[ENA]
¡û
>WENV181226210
OFDK01000214
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
16317
16242
-
Ala
GGC
[ENA]
¢þ
>W141153130
AXDC01000015
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
21716
21791
+
Ala
GGC
[ENA]
¡û
>C08010962
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1393054
1393129
+
Ala
GGC
[Ensembl]
¡û
>C08011079
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1392551
1392479
-
Ala
GGC
[Ensembl]
¡û
>W141276506
JADV01000033
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
15643
15718
+
Ala
GGC
[ENA]
¡û
>WENV170675656
LDZP01000186
[LDZP] terrestrial metagenome; oil reservoir sample I1
23750
23825
+
Ala
GGC
[ENA]
¢þ
>WENV170676233
LDZR01001824
[LDZR] terrestrial metagenome; oil reservoir sample K2
2415
2340
-
Ala
GGC
[ENA]
¢þ
>WENV170676892
LDZS01003075
[LDZS] terrestrial metagenome; oil reservoir sample K3
1588
1663
+
Ala
GGC
[ENA]
¢þ
>WENV170779389
LZQN01004672
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
712
637
-
Ala
GGC
[ENA]
¢þ
>C191108114
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1543468
1543543
+
Ala
GGC
-
¡û
>W09112132
ABXP01000085
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
1027
1102
+
Ala
GGC
[ENA]
¡û
>W09133532
ACPF01000025
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
24681
24756
+
Ala
GGC
[ENA]
¡û
>W09134143
ACQZ01000028
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
25950
26025
+
Ala
GGC
[ENA]
¡û
>W09135045
ACVH01000012
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
43814
43739
-
Ala
GGC
[ENA]
¡û
>W09135146
ACVK01000005
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
76929
77004
+
Ala
GGC
[ENA]
¡û
>W09135865
ACXP01000023
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
24685
24760
+
Ala
GGC
[ENA]
¡û
>C151045302
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
976348
976423
+
Ala
GGC
[Ensembl]
¡û
>W10105935
ACXY01000017
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
24105
24030
-
Ala
GGC
[ENA]
¡û
>W10120499
ADXD01000046
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
8126
8051
-
Ala
GGC
[ENA]
¡û
>C10113388
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
991920
991995
+
Ala
GGC
[Ensembl]
¡û
>C10113442
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1009708
1009783
+
Ala
GGC
[Ensembl]
¡û
>W11108258
ACXY01000017
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
24105
24030
-
Ala
GGC
[ENA]
¡û
>C11122506
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1384741
1384666
-
Ala
GGC
[Ensembl]
¡û
>C11122737
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1521329
1521254
-
Ala
GGC
[Ensembl]
¡û
>C11123239
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1103366
1103441
+
Ala
GGC
[Ensembl]
¡û
>W11127108
ADXD01000046
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
8126
8051
-
Ala
GGC
[ENA]
¡û
>W11152642
AEYS01000005
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
41651
41576
-
Ala
GGC
[ENA]
¡û
>W1610043682
BAZY01000037
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
15299
15374
+
Ala
GGC
[ENA]
¡û
>W121068129
AJUD01000022
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
36033
35958
-
Ala
GGC
[ENA]
¡û
>W1610612288
LGEO01000023
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
23750
23825
+
Ala
GGC
[ENA]
¡û
>W1610612635
LGEY01000016
Bacillota
Caldanaerobacter subterraneus [LGEY]
2415
2340
-
Ala
GGC
[ENA]
¡û
>W1610613188
LGFN01000179
Bacillota
Caldanaerobacter subterraneus [LGFN]
1588
1663
+
Ala
GGC
[ENA]
¡û
>W1710040842
BAZY01000037
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
15299
15374
+
Ala
GGC
[ENA]
¡û
>W1710515347
FNBS01000111
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
2163
2088
-
Ala
GGC
[ENA]
¡û
>W1710560394
FONI01000067
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
8130
8205
+
Ala
GGC
[ENA]
¡û
>W1710733794
LGEO01000023
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
23750
23825
+
Ala
GGC
[ENA]
¡û
>W1710733956
LGEY01000016
Bacillota
Caldanaerobacter subterraneus [LGEY]
2415
2340
-
Ala
GGC
[ENA]
¡û
>W1710734395
LGFN01000179
Bacillota
Caldanaerobacter subterraneus [LGFN]
1588
1663
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK