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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240992 (71 seq.)
>W1710785167
LJHQ01000003
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
240905
240828
-
Pro
GGG
[ENA]
¡û
>W1710869486
LMJT01000016
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
62322
62245
-
Pro
GGG
[ENA]
¡û
>W1710869509
LMJU01000001
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
366306
366229
-
Pro
GGG
[ENA]
¡û
>W1710869644
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
200446
200523
+
Pro
GGG
[ENA]
¡û
>W1710879537
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
302788
302711
-
Pro
GGG
[ENA]
¡û
>W1710893366
LNER01000305
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
10883
10806
-
Pro
GGG
[ENA]
¡û
>W1711072938
LSIB01000073
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
15313
15390
+
Pro
GGG
[ENA]
¡û
>W1711073125
LSIG01000072
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
43716
43793
+
Pro
GGG
[ENA]
¡û
>W1711073312
LSIK01000300
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
7719
7796
+
Pro
GGG
[ENA]
¡û
>W1711074365
LSJL01000197
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
7719
7796
+
Pro
GGG
[ENA]
¡û
>W1711074528
LSJP01000453
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
1454
1377
-
Pro
GGG
[ENA]
¡û
>W1711074598
LSJR01000226
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
7718
7795
+
Pro
GGG
[ENA]
¡û
>W1711074712
LSJU01000252
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1454
1377
-
Pro
GGG
[ENA]
¡û
>W1711074765
LSJV01000087
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
45033
45110
+
Pro
GGG
[ENA]
¡û
>W1711074841
LSJX01000057
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
15373
15450
+
Pro
GGG
[ENA]
¡û
>W1711075573
LSKN01000196
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
15373
15450
+
Pro
GGG
[ENA]
¡û
>W1711385466
MEEG01000068
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
25624
25547
-
Pro
GGG
[ENA]
¡û
>W1711502380
MKSQ01000008
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
1526
1449
-
Pro
GGG
[ENA]
¡û
>C171049988
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
2355732
2355655
-
Pro
GGG
-
¡û
>C171057761
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
3708381
3708304
-
Pro
GGG
-
¡û
>WENV181227467
OFDN01011912
[OFDN] hot springs metagenome; Water
2529
2606
+
Pro
GGG
[ENA]
¢þ
>WENV181414850
OGCL01001759
[OGCL] hot springs metagenome; Hot spring water
7421
7498
+
Pro
GGG
[ENA]
¢þ
>WENV170011890
APMI01099903
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
272
195
-
Pro
GGG
[ENA]
¢þ
>WENV170011891
APMI01099904
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
556
479
-
Pro
GGG
[ENA]
¢þ
>WENV170681026
LFEF01044631
[LFEF] freshwater metagenome; waterbloom
5023
4946
-
Pro
GGG
[ENA]
¢þ
>WENV170711492
LNFM01005504
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
27166
27089
-
Pro
GGG
[ENA]
¢þ
>WENV170714275
LNFM01064901
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
69
146
+
Pro
GGG
[ENA]
¢þ
>WENV171003164
NNBT01002044
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
19652
19575
-
Pro
GGG
[ENA]
¢þ
>WENV171003784
NNBV01000766
[NNBV] plant metagenome; symbiotic tissue sample KVS11
69382
69305
-
Pro
GGG
[ENA]
¢þ
>C181063196
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
3601836
3601913
+
Pro
GGG
-
¡û
>C191014035
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
2043310
2043233
-
Pro
GGG
-
¡û
>W141805287
JPKG01000007
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
25639
25562
-
Pro
GGG
[ENA]
¡û
>W141815819
JQJJ01000012
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
192757
192680
-
Pro
GGG
[ENA]
¡û
>W1910501741
FYAS01000053
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
533
610
+
Pro
GGG
[ENA]
¡û
>W1910635420
LNCQ01000040
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
195929
196006
+
Pro
GGG
[ENA]
¡û
>W1910840138
MZXT01000013
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
205679
205756
+
Pro
GGG
[ENA]
¡û
>W1910840152
MZXU01000002
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
205551
205628
+
Pro
GGG
[ENA]
¡û
>W1910847639
NBDP01000005
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
289549
289472
-
Pro
GGG
[ENA]
¡û
>W1810252015
PQFZ01000007
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
44241
44318
+
Pro
GGG
[ENA]
¡û
>W1810463368
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
5375828
5375905
+
Pro
GGG
[ENA]
¡û
>W1810676915
QKMI01000013
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
82940
82863
-
Pro
GGG
[ENA]
¡û
>W1511352999
JROW01000022
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
1554
1631
+
Pro
GGG
[ENA]
¡û
>C161070706
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
813299
813222
-
Pro
GGG
[Ensembl]
¡û
>W1610550634
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
252262
252185
-
Pro
GGG
[ENA]
¡û
>W1610617160
LGSZ01000022
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
4483
4406
-
Pro
GGG
[ENA]
¡û
>W1610648973
LJHQ01000003
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
240905
240828
-
Pro
GGG
[ENA]
¡û
>W1610731832
LMJT01000016
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
62322
62245
-
Pro
GGG
[ENA]
¡û
>W1610731855
LMJU01000001
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
366306
366229
-
Pro
GGG
[ENA]
¡û
>W1610731990
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
200446
200523
+
Pro
GGG
[ENA]
¡û
>W1610741883
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
302788
302711
-
Pro
GGG
[ENA]
¡û
>W1610753632
LNER01000305
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
10883
10806
-
Pro
GGG
[ENA]
¡û
>W1610912198
LSIB01000073
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
15313
15390
+
Pro
GGG
[ENA]
¡û
>W1610912430
LSIG01000072
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
43716
43793
+
Pro
GGG
[ENA]
¡û
>W1610912617
LSIK01000300
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
7719
7796
+
Pro
GGG
[ENA]
¡û
>W1610913670
LSJL01000197
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
7719
7796
+
Pro
GGG
[ENA]
¡û
>W1610913833
LSJP01000453
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
1454
1377
-
Pro
GGG
[ENA]
¡û
>W1610913903
LSJR01000226
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
7718
7795
+
Pro
GGG
[ENA]
¡û
>W1610914017
LSJU01000252
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1454
1377
-
Pro
GGG
[ENA]
¡û
>W1610914070
LSJV01000087
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
45033
45110
+
Pro
GGG
[ENA]
¡û
>W1610914146
LSJX01000057
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
15373
15450
+
Pro
GGG
[ENA]
¡û
>W1610914878
LSKN01000196
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
15373
15450
+
Pro
GGG
[ENA]
¡û
>W1710064193
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
5501870
5501947
+
Pro
GGG
[ENA]
¡û
>W1710515681
FNBZ01000001
Alphaproteobacteria
Bosea robiniae [FNBZ]
342942
342865
-
Pro
GGG
[ENA]
¡û
>W1710538966
FNUY01000010
Alphaproteobacteria
Bosea lathyri [FNUY]
104482
104405
-
Pro
GGG
[ENA]
¡û
>W1710544008
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
893748
893671
-
Pro
GGG
[ENA]
¡û
>W1710556996
FOKP01000013
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
51538
51615
+
Pro
GGG
[ENA]
¡û
>W1710564904
FOQV01000001
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
274560
274483
-
Pro
GGG
[ENA]
¡û
>W1710596426
FTMO01000001
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
240175
240098
-
Pro
GGG
[ENA]
¡û
>W1710603292
FUYX01000011
Alphaproteobacteria
Bosea thiooxidans [FUYX]
67187
67110
-
Pro
GGG
[ENA]
¡û
>W1710660469
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
252262
252185
-
Pro
GGG
[ENA]
¡û
>W1710742774
LGSZ01000022
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
4483
4406
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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