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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240995 (93 seq.)
>W1710877164
LMPW01000011
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
299466
299541
+
Val
TAC
[ENA]
¡û
>W1710877189
LMPW01000015
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
341303
341380
+
Val
TAC
[ENA]
¡û
>W1710906816
LNOH01000010
Bacteroidota
Elizabethkingia meningoseptica [LNOH]
112448
112523
+
Val
TAC
[ENA]
¡û
>W1711300469
MAGZ01000018
Bacteroidota
Elizabethkingia meningoseptica [MAGZ]
44982
44907
-
Val
TAC
[ENA]
¡û
>W1711300597
MAHC01000016
Bacteroidota
Elizabethkingia meningoseptica [MAHC]
626999
626924
-
Val
TAC
[ENA]
¡û
>W1711300644
MAHE01000002
Bacteroidota
Elizabethkingia meningoseptica [MAHE]
50831
50756
-
Val
TAC
[ENA]
¡û
>W1711300685
MAHF01000003
Bacteroidota
Elizabethkingia meningoseptica [MAHF]
6913
6988
+
Val
TAC
[ENA]
¡û
>W1711300843
MAHI01000013
Bacteroidota
Elizabethkingia meningoseptica [MAHI]
126751
126826
+
Val
TAC
[ENA]
¡û
>W1711301556
MAHZ01000007
Bacteroidota
Elizabethkingia meningoseptica [MAHZ]
214007
213932
-
Val
TAC
[ENA]
¡û
>W1711301621
MAIA01000014
Bacteroidota
Elizabethkingia meningoseptica [MAIA]
50725
50650
-
Val
TAC
[ENA]
¡û
>W1711344636
MCJH01000007
Bacteroidota
Elizabethkingia meningoseptica [MCJH]
112065
112140
+
Val
TAC
[ENA]
¡û
>W1711373073
MDTY01000008
Bacteroidota
Elizabethkingia meningoseptica [MDTY]
112065
112140
+
Val
TAC
[ENA]
¡û
>W1711373118
MDTZ01000012
Bacteroidota
Elizabethkingia meningoseptica [MDTZ]
50696
50621
-
Val
TAC
[ENA]
¡û
>W1711392151
MENH01000012
Bacteroidota
Bacteroidetes bacterium GWA2_40_14 [MENH]
14465
14390
-
Val
TAC
[ENA]
¡û
>W1711392152
MENH01000012
Bacteroidota
Bacteroidetes bacterium GWA2_40_14 [MENH]
14364
14287
-
Val
TAC
[ENA]
¡û
>W1711392452
MENO01000163
Bacteroidota
Bacteroidetes bacterium GWC2_40_13 [MENO]
14410
14335
-
Val
TAC
[ENA]
¡û
>W1711392453
MENO01000163
Bacteroidota
Bacteroidetes bacterium GWC2_40_13 [MENO]
14309
14232
-
Val
TAC
[ENA]
¡û
>W1711392586
MENS01000048
Bacteroidota
Bacteroidetes bacterium GWD2_40_43 [MENS]
14460
14385
-
Val
TAC
[ENA]
¡û
>W1711392587
MENS01000048
Bacteroidota
Bacteroidetes bacterium GWD2_40_43 [MENS]
14359
14282
-
Val
TAC
[ENA]
¡û
>W1711392801
MENY01000036
Bacteroidota
Bacteroidetes bacterium GWE2_40_63 [MENY]
14460
14385
-
Val
TAC
[ENA]
¡û
>W1711392802
MENY01000036
Bacteroidota
Bacteroidetes bacterium GWE2_40_63 [MENY]
14359
14282
-
Val
TAC
[ENA]
¡û
>W1711393187
MEOJ01000005
Bacteroidota
Bacteroidetes bacterium GWF2_40_13 [MEOJ]
14464
14389
-
Val
TAC
[ENA]
¡û
>W1711393188
MEOJ01000005
Bacteroidota
Bacteroidetes bacterium GWF2_40_13 [MEOJ]
14363
14286
-
Val
TAC
[ENA]
¡û
>W1711393874
MEPN01000078
Bacteroidota
Bacteroidetes bacterium RIFOXYC2_FULL_40_12 [MEPN]
24159
24234
+
Val
TAC
[ENA]
¡û
>W1711393875
MEPN01000078
Bacteroidota
Bacteroidetes bacterium RIFOXYC2_FULL_40_12 [MEPN]
24260
24337
+
Val
TAC
[ENA]
¡û
>W1711505175
MKVG01000004
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
35392
35315
-
Val
TAC
[ENA]
¡û
>W1711505204
MKVG01000020
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
300225
300300
+
Val
TAC
[ENA]
¡û
>W1711628533
MPOG01000013
Bacteroidota
Elizabethkingia meningoseptica [MPOG]
50781
50706
-
Val
TAC
[ENA]
¡û
>C171048191
CP016376
Bacteroidota
Elizabethkingia meningoseptica G4076 [CP016376]
599237
599312
+
Val
TAC
-
¡û
>C171048291
CP016378
Bacteroidota
Elizabethkingia meningoseptica G4120 [CP016378]
1038680
1038755
+
Val
TAC
-
¡û
>W131188318
ASAN01000006
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [ASAN]
112275
112350
+
Val
TAC
[ENA]
¡û
>W131241072
BARD01000002
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [BARD]
64581
64506
-
Val
TAC
[ENA]
¡û
>WENV180082530
MPMC02231500
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
351
276
-
Val
TAC
[ENA]
¢þ
>WENV180396739
OBPV01077549
[OBPV] marine metagenome; ENVO:00002010
34
109
+
Val
TAC
[ENA]
¢þ
>WENV181402002
OFTY01000024
[OFTY] sludge metagenome; sludge
123701
123778
+
Val
TAC
[ENA]
¢þ
>WENV181402003
OFTY01000024
[OFTY] sludge metagenome; sludge
123824
123899
+
Val
TAC
[ENA]
¢þ
>WENV181731326
OGQD01000398
[OGQD] human gut metagenome; faeces
21002
21077
+
Val
TAC
[ENA]
¢þ
>WENV182550706
OJCA01031466
[OJCA] seawater metagenome; Sea water
283
358
+
Val
TAC
[ENA]
¢þ
>WENV170296730
CESE01044776
[CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11482
11405
-
Val
TAC
[ENA]
¢þ
>WENV170641898
JFJP01037995
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6161
6084
-
Val
TAC
[ENA]
¢þ
>WENV170663159
JYMV01002644
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
20338
20263
-
Val
TAC
[ENA]
¢þ
>WENV170664212
JYMV01013943
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
11564
11639
+
Val
TAC
[ENA]
¢þ
>WENV170920451
MDTF01017943
[MDTF] marine metagenome; seawater
11271
11194
-
Val
TAC
[ENA]
¢þ
>C181016475
CP014338
Bacteroidota
Elizabethkingia meningoseptica KC1913 [CP014338]
599237
599312
+
Val
TAC
-
¡û
>C181168487
CP028811
Bacteroidota
Flavobacterium magnum HYN0048 [CP028811]
1479774
1479849
+
Val
TAC
-
¡û
>C181168506
CP028811
Bacteroidota
Flavobacterium magnum HYN0048 [CP028811]
2623402
2623327
-
Val
TAC
-
¡û
>C181175932
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
1601450
1601525
+
Val
TAC
-
¡û
>C181175946
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
2809386
2809461
+
Val
TAC
-
¡û
>C181209500
LS483376
Bacteroidota
Elizabethkingia meningoseptica NCTC10016 [LS483376]
2015915
2015840
-
Val
TAC
-
¡û
>C191115363
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
1580755
1580680
-
Val
TAC
-
¡û
>C191116068
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
2672642
2672717
+
Val
TAC
-
¡û
>C191116179
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
343097
343022
-
Val
TAC
-
¡û
>C191116523
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
4275683
4275758
+
Val
TAC
-
¡û
>W1910285411
FRFB01000012
Bacteroidota
Elizabethkingia meningoseptica [FRFB]
6969
7044
+
Val
TAC
[ENA]
¡û
>W1910341253
FTPF01000014
Bacteroidota
Elizabethkingia meningoseptica [FTPF]
2292
2217
-
Val
TAC
[ENA]
¡û
>W1910342540
FTRA01000056
Bacteroidota
Elizabethkingia meningoseptica 58-80 [FTRA]
8540
8465
-
Val
TAC
[ENA]
¡û
>W1910808923
MUGT01000012
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
4914
4837
-
Val
TAC
[ENA]
¡û
>W1910808924
MUGT01000012
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
4807
4732
-
Val
TAC
[ENA]
¡û
>W1910808956
MUGT01000135
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
5283
5358
+
Val
TAC
[ENA]
¡û
>W1910927707
NIPO01000001
Bacteroidota
Avrilella dinanensis UR159 [NIPO]
2000834
2000909
+
Val
TAC
[ENA]
¡û
>W1910927708
NIPO01000001
Bacteroidota
Avrilella dinanensis UR159 [NIPO]
2000963
2001038
+
Val
TAC
[ENA]
¡û
>W1910927709
NIPO01000001
Bacteroidota
Avrilella dinanensis UR159 [NIPO]
2001092
2001167
+
Val
TAC
[ENA]
¡û
>W1911564290
PCMW01000068
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
14918
14841
-
Val
TAC
[ENA]
¡û
>W1911564291
PCMW01000068
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
14811
14736
-
Val
TAC
[ENA]
¡û
>W1911701707
QNVS01000004
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
7125
7050
-
Val
TAC
[ENA]
¡û
>W1911701982
QNVW01000001
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
391440
391365
-
Val
TAC
[ENA]
¡û
>W1810173576
PJND01000009
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
56541
56466
-
Val
TAC
[ENA]
¡û
>W1810173582
PJND01000013
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
20254
20329
+
Val
TAC
[ENA]
¡û
>W1810628397
QICL01000022
Bacteroidota
Dysgonomonas alginatilytica DSM 100214 [QICL]
15318
15393
+
Val
TAC
[ENA]
¡û
>W1510650973
CVRU01000059
Bacteroidota
Dysgonomonas sp. HGC4 [CVRU]
12511
12588
+
Val
TAC
[ENA]
¡û
>W1511685161
LFNE01000001
Bacteroidota
Chryseobacterium sp. FH2 [LFNE]
355737
355660
-
Val
TAC
[ENA]
¡û
>W1511698627
LGIA01000070
Bacteroidota
Sunxiuqinia dokdonensis SK [LGIA]
1737
1660
-
Val
TAC
[ENA]
¡û
>C121017029
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1202423
1202346
-
Val
TAC
[Ensembl]
¡û
>C121017030
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1202316
1202241
-
Val
TAC
[Ensembl]
¡û
>C161084426
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
2041572
2041649
+
Val
TAC
[Ensembl]
¡û
>W1610507435
FLSV01000005
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
112174
112249
+
Val
TAC
[ENA]
¡û
>W1610596808
LELA01000031
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
420
343
-
Val
TAC
[ENA]
¡û
>W1610597209
LFEG01000046
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
71402
71479
+
Val
TAC
[ENA]
¡û
>W1610634223
LIRF01000008
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
723857
723934
+
Val
TAC
[ENA]
¡û
>W1610739510
LMPW01000011
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
299466
299541
+
Val
TAC
[ENA]
¡û
>W1610739535
LMPW01000015
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
341303
341380
+
Val
TAC
[ENA]
¡û
>W1610765830
LNOH01000010
Bacteroidota
Elizabethkingia meningoseptica [LNOH]
112448
112523
+
Val
TAC
[ENA]
¡û
>W1710499653
FLSV01000005
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
112174
112249
+
Val
TAC
[ENA]
¡û
>W1710519769
FNEZ01000002
Bacteroidota
Flavobacterium noncentrifugens [FNEZ]
89703
89626
-
Val
TAC
[ENA]
¡û
>W1710519773
FNEZ01000004
Bacteroidota
Flavobacterium noncentrifugens [FNEZ]
106147
106070
-
Val
TAC
[ENA]
¡û
>W1710582251
FPKW01000008
Bacteroidota
Chryseobacterium limigenitum [FPKW]
600
523
-
Val
TAC
[ENA]
¡û
>W1710590242
FRAV01000020
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
412
335
-
Val
TAC
[ENA]
¡û
>W1710594987
FSRQ01000002
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
372008
371931
-
Val
TAC
[ENA]
¡û
>W1710595893
FTMF01000008
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
449
372
-
Val
TAC
[ENA]
¡û
>W1710603553
FUZE01000001
Bacteroidota
Chryseobacterium balustinum [FUZE]
182036
181959
-
Val
TAC
[ENA]
¡û
>W1710717813
LELA01000031
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
420
343
-
Val
TAC
[ENA]
¡û
>W1710718533
LFEG01000046
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
71402
71479
+
Val
TAC
[ENA]
¡û
>W1710768600
LIRF01000008
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
723857
723934
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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