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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241062 (66 seq.)
>A171000745
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
2820018
2819944
-
Glu
TTC
-
¡û
>A171001186
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
1844333
1844259
-
Glu
TTC
-
¡û
>A171001401
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
2646860
2646934
+
Glu
TTC
-
¡û
>A171001576
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
1640752
1640827
+
Glu
TTC
-
¡û
>A171002639
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1638003
1637928
-
Glu
TTC
-
¡û
>A171003972
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
1649436
1649361
-
Glu
TTC
-
¡û
>A171005808
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
3282714
3282639
-
Glu
TTC
-
¡û
>A171006211
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
2757211
2757286
+
Glu
TTC
-
¡û
>A171007245
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
2497665
2497590
-
Glu
TTC
-
¡û
>At0777
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
970207
970133
-
Glu
TTC
[Ensembl]
¡û
>WENV170659860
JXWS01012752
[JXWS] soil metagenome; rice field; elevated CO2
429
354
-
Glu
TTC
[ENA]
¢þ
>WENV170660038
JXWS01104192
[JXWS] soil metagenome; rice field; elevated CO2
390
465
+
Glu
TTC
[ENA]
¢þ
>W1910006711
BBJO01000034
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
3294
3368
+
Glu
TTC
[ENA]
¡û
>W1910175122
BIXZ01000008
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
31683
31608
-
Glu
TTC
[ENA]
¡û
>W1910186227
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
418645
418720
+
Glu
TTC
[ENA]
¡û
>W1910228404
FNOF01000027
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
14812
14887
+
Glu
TTC
[ENA]
¡û
>W1910228430
FNPB01000005
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
93570
93645
+
Glu
TTC
[ENA]
¡û
>W1910228597
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
665619
665545
-
Glu
TTC
[ENA]
¡û
>W1910282451
FRAN01000002
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
106860
106934
+
Glu
TTC
[ENA]
¡û
>W1910583061
JXAO01000050
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
10281
10206
-
Glu
TTC
[ENA]
¡û
>W1910617614
LIUF01000006
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
23134
23059
-
Glu
TTC
[ENA]
¡û
>W1910696305
MEIH01000386
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
12037
12111
+
Glu
TTC
[ENA]
¡û
>W1911629795
PSYS01000004
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
95424
95349
-
Glu
TTC
[ENA]
¡û
>W1911629843
PSYT01000002
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
94973
94898
-
Glu
TTC
[ENA]
¡û
>W1911629867
PSYU01000001
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
95817
95742
-
Glu
TTC
[ENA]
¡û
>W1911629942
PSYV01000002
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
95723
95648
-
Glu
TTC
[ENA]
¡û
>W1911630042
PSYX01000003
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
95723
95648
-
Glu
TTC
[ENA]
¡û
>W1911630093
PSYY01000002
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
101414
101339
-
Glu
TTC
[ENA]
¡û
>W1911655704
QEQI01000002
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
719479
719554
+
Glu
TTC
[ENA]
¡û
>W1911655760
QEQJ01000006
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
122420
122495
+
Glu
TTC
[ENA]
¡û
>W1911709471
QPLN01000004
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
137649
137724
+
Glu
TTC
[ENA]
¡û
>W1911709523
QPLO01000002
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
94973
94898
-
Glu
TTC
[ENA]
¡û
>W1911709571
QPLP01000002
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
94973
94898
-
Glu
TTC
[ENA]
¡û
>W1911709609
QPLQ01000004
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
307805
307730
-
Glu
TTC
[ENA]
¡û
>W1911709632
QPLR01000002
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
246601
246675
+
Glu
TTC
[ENA]
¡û
>W1911769985
QXIJ01000004
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
330073
329998
-
Glu
TTC
[ENA]
¡û
>W1911770026
QXIK01000004
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
146298
146373
+
Glu
TTC
[ENA]
¡û
>W1610000865
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
431176
431102
-
Glu
TTC
[ENA]
¡û
>W1610002961
AEMG01000004
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
139729
139803
+
Glu
TTC
[ENA]
¡û
>W1610003281
AFNT02000045
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
24428
24353
-
Glu
TTC
[ENA]
¡û
>W1610011495
ANPG01000007
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
7836
7761
-
Glu
TTC
[ENA]
¡û
>W1610011810
AOHU01000047
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
131976
132050
+
Glu
TTC
[ENA]
¡û
>W1610011870
AOHV01000037
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
22483
22408
-
Glu
TTC
[ENA]
¡û
>W1610012840
AOIV01000003
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
127619
127693
+
Glu
TTC
[ENA]
¡û
>W1610013495
AOLD01000047
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
65367
65442
+
Glu
TTC
[ENA]
¡û
>W1610013516
AOLE01000012
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
65354
65429
+
Glu
TTC
[ENA]
¡û
>W1610013577
AOLF01000027
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
65306
65381
+
Glu
TTC
[ENA]
¡û
>W1610013641
AOLG01000047
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
3408
3333
-
Glu
TTC
[ENA]
¡û
>W1610013655
AOLH01000002
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
59438
59363
-
Glu
TTC
[ENA]
¡û
>W1610013771
AOLJ01000013
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
103459
103384
-
Glu
TTC
[ENA]
¡û
>W1610013908
AOLM01000002
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
51295
51370
+
Glu
TTC
[ENA]
¡û
>W1610014049
AOLO01000013
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
89366
89440
+
Glu
TTC
[ENA]
¡û
>W1610014076
AOLP01000011
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
98565
98490
-
Glu
TTC
[ENA]
¡û
>W1610014137
AOLQ01000033
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
14717
14792
+
Glu
TTC
[ENA]
¡û
>W1610014184
AOLR01000016
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
37898
37973
+
Glu
TTC
[ENA]
¡û
>W1610014242
AOLS01000098
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
134505
134580
+
Glu
TTC
[ENA]
¡û
>W1610014266
AOLW01000015
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
136825
136900
+
Glu
TTC
[ENA]
¡û
>W1610014307
AOLX01000014
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
111778
111853
+
Glu
TTC
[ENA]
¡û
>W1610014384
AOLY01000032
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
18911
18986
+
Glu
TTC
[ENA]
¡û
>W1610018834
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
974201
974275
+
Glu
TTC
[ENA]
¡û
>W1610029932
AXZD01000008
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
220433
220508
+
Glu
TTC
[ENA]
¡û
>W1610061924
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
955142
955067
-
Glu
TTC
[ENA]
¡û
>W1610061945
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
1984826
1984901
+
Glu
TTC
[ENA]
¡û
>W1610784316
LOEP01000033
Euryarchaeota
Haloferax sp. Q22 [LOEP]
49316
49241
-
Glu
TTC
[ENA]
¡û
>W1610881024
LRHL01000023
Euryarchaeota
Haloarcula sp. K1 [LRHL]
516954
516879
-
Glu
TTC
[ENA]
¡û
>W1610986952
LWHG01000028
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
60546
60620
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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