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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241132 (27 seq.)
>A171001119
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
1049792
1049866
+
Arg
TCG
-
¡û
>A171002729
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
961322
961248
-
Arg
TCG
-
¡û
>A171003472
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1024730
1024804
+
Arg
TCG
-
¡û
>A171006866
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2906575
2906501
-
Arg
TCG
-
¡û
>WENV180318329
OBKM01000417
[OBKM] metagenome; water
76
2
-
Arg
TCG
[ENA]
¢þ
>WENV181404283
OGBZ01010613
[OGBZ] sediment metagenome; hot spring sediment
365
290
-
Arg
TCG
[ENA]
¢þ
>At1729
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
2172895
2172821
-
Arg
TCG
[Ensembl]
¡û
>WENV170660054
JXWS01117013
[JXWS] soil metagenome; rice field; elevated CO2
551
476
-
Arg
TCG
[ENA]
¢þ
>W1910226739
FNBK01000012
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
47939
48013
+
Arg
TCG
[ENA]
¡û
>W1910227126
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
829653
829727
+
Arg
TCG
[ENA]
¡û
>W1910229698
FOCX01000010
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
129850
129776
-
Arg
TCG
[ENA]
¡û
>W1910229942
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
352555
352481
-
Arg
TCG
[ENA]
¡û
>W1910340535
FTNR01000002
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
14723
14649
-
Arg
TCG
[ENA]
¡û
>W1910575866
JROF01000001
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
98523
98449
-
Arg
TCG
[ENA]
¡û
>W1910826083
MWPH01000001
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
959588
959663
+
Arg
TCG
[ENA]
¡û
>W1911693755
QLVG01000047
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
5830
5904
+
Arg
TCG
[ENA]
¡û
>W1911696829
QNGA01000004
Euryarchaeota
halophilic archaeon H22 [QNGA]
175555
175629
+
Arg
TCG
[ENA]
¡û
>W1911709868
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
830822
830748
-
Arg
TCG
[ENA]
¡û
>W1911710006
QPND01000036
Euryarchaeota
Saliphagus sp. LR7 [QPND]
4352
4278
-
Arg
TCG
[ENA]
¡û
>W1610012020
AOHZ01000014
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
74416
74342
-
Arg
TCG
[ENA]
¡û
>W1610012097
AOIA01000155
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
4161
4087
-
Arg
TCG
[ENA]
¡û
>W1610012633
AOIQ01000008
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
3228
3302
+
Arg
TCG
[ENA]
¡û
>W1610012703
AOIS01000010
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
52298
52372
+
Arg
TCG
[ENA]
¡û
>W1610014468
AOMA01000086
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
5174
5100
-
Arg
TCG
[ENA]
¡û
>W1610046856
BBCV01000026
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
1475
1400
-
Arg
TCG
[ENA]
¡û
>W1610082996
CBMA010000048
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
79211
79137
-
Arg
TCG
[ENA]
¡û
>W1610671376
LKCV01000095
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
4721
4647
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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