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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241145 (23 seq.)
>A171000011
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
974980
975054
+
Glu
TTC
-
¡û
>A171004174
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
1624472
1624547
+
Glu
TTC
-
¡û
>A171007457
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
1355097
1355022
-
Glu
TTC
-
¡û
>A178000030
CP001365
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
1566519
1566630
+
Glu
TTC
-
¡û
>At0805
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
982991
983065
+
Glu
TTC
[Ensembl]
¡û
>WENV170659905
JXWS01030402
[JXWS] soil metagenome; rice field; elevated CO2
276
199
-
Glu
TTC
[ENA]
¢þ
>W1910228449
FNPC01000001
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
159961
160035
+
Glu
TTC
[ENA]
¡û
>W1910228521
FNQT01000002
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
421344
421418
+
Glu
TTC
[ENA]
¡û
>W1910229365
FNWU01000002
Euryarchaeota
Halopenitus malekzadehii IBRC-M10418 [FNWU]
258492
258418
-
Glu
TTC
[ENA]
¡û
>W1910230007
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
141937
142012
+
Glu
TTC
[ENA]
¡û
>W1910281644
FQWV01000009
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
41328
41403
+
Glu
TTC
[ENA]
¡û
>W1610004179
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
1734008
1733933
-
Glu
TTC
[ENA]
¡û
>W1610020288
ASGZ01000023
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
17634
17708
+
Glu
TTC
[ENA]
¡û
>W1610021330
ATCR02000012
Euryarchaeota
haloarchaeon 3A1-DGR 3A1_DGR [ATCR]
243088
243162
+
Glu
TTC
[ENA]
¡û
>W1610024384
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
252323
252248
-
Glu
TTC
[ENA]
¡û
>W1610061880
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
1383133
1383058
-
Glu
TTC
[ENA]
¡û
>W1610085079
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
113992
113917
-
Glu
TTC
[ENA]
¡û
>W1610085106
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
1345633
1345708
+
Glu
TTC
[ENA]
¡û
>W1610085145
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
1388662
1388737
+
Glu
TTC
[ENA]
¡û
>W1610085184
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
1387448
1387523
+
Glu
TTC
[ENA]
¡û
>W1610085245
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
1171420
1171345
-
Glu
TTC
[ENA]
¡û
>W1610085278
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
114084
114009
-
Glu
TTC
[ENA]
¡û
>W1610085327
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
1127894
1127819
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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