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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241232 (13 seq.)
>A171001890
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
654992
654915
-
Ala
GGC
-
¡û
>A171002283
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
228125
228202
+
Ala
GGC
-
¡û
>A171003781
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
1641462
1641539
+
Ala
GGC
-
¡û
>A171003880
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1988690
1988767
+
Ala
GGC
-
¡û
>A171004037
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
708819
708896
+
Ala
GGC
-
¡û
>A171006370
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
655201
655124
-
Ala
GGC
-
¡û
>A171006490
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
788866
788789
-
Ala
GGC
-
¡û
>WENV170676199
LDZR01001638
[LDZR] terrestrial metagenome; oil reservoir sample K2
41
118
+
Ala
GGC
[ENA]
¢þ
>W1910200339
FJMQ01000151
Euryarchaeota
Thermococcus litoralis [FJMQ]
46699
46776
+
Ala
GGC
[ENA]
¡û
>W1610000720
ABSF01000010
Euryarchaeota
Thermococcus barophilus MP [ABSF]
67816
67739
-
Ala
GGC
[ENA]
¡û
>W1610004928
AHVB01000047
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
232
155
-
Ala
GGC
[ENA]
¡û
>W1610005566
AKID01000023
Euryarchaeota
Thermococcus sp. PK [AKID]
22916
22839
-
Ala
GGC
[ENA]
¡û
>W1610548888
JXCG01000011
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
41254
41177
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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