This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241241 (24 seq.)
>A171000514
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
82989
82912
-
Tyr
GTA
-
¡û
>A171000720
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
80959
80882
-
Tyr
GTA
-
¡û
>A171002677
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1486976
1486899
-
Tyr
GTA
-
¡û
>A171003895
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
814645
814568
-
Tyr
GTA
-
¡û
>A171004054
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1855796
1855719
-
Tyr
GTA
-
¡û
>A171004234
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
765703
765626
-
Tyr
GTA
-
¡û
>A171004281
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1374909
1374986
+
Tyr
GTA
-
¡û
>A171006605
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
907750
907673
-
Tyr
GTA
-
¡û
>At1883
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
909699
909776
+
Tyr
GTA
[Ensembl]
¡û
>At1935
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1913492
1913569
+
Tyr
GTA
[Ensembl]
¡û
>WENV170676308
LDZR01002234
[LDZR] terrestrial metagenome; oil reservoir sample K2
9174
9097
-
Tyr
GTA
[ENA]
¢þ
>WENV170676730
LDZS01002050
[LDZS] terrestrial metagenome; oil reservoir sample K3
84
7
-
Tyr
GTA
[ENA]
¢þ
>WENV170676738
LDZS01002072
[LDZS] terrestrial metagenome; oil reservoir sample K3
9530
9453
-
Tyr
GTA
[ENA]
¢þ
>WENV170779396
LZQN01005624
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
120
45
-
Tyr
GTA
[ENA]
¢þ
>W1910200307
FJMQ01000029
Euryarchaeota
Thermococcus litoralis [FJMQ]
1453
1376
-
Tyr
GTA
[ENA]
¡û
>W1610000870
ABXN01000007
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
27148
27071
-
Tyr
GTA
[ENA]
¡û
>W1610004919
AHVB01000035
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
42580
42657
+
Tyr
GTA
[ENA]
¡û
>W1610005299
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
337468
337391
-
Tyr
GTA
[ENA]
¡û
>W1610045154
BBBE01000001
Euryarchaeota
Thermococcus peptonophilus JCM 9653 [BBBE]
346951
347028
+
Tyr
GTA
[ENA]
¡û
>W1610046815
BBCU01000001
Euryarchaeota
Thermococcus sp. JCM 11816 [BBCU]
296030
296107
+
Tyr
GTA
[ENA]
¡û
>W1610548858
JXCG01000001
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
185677
185600
-
Tyr
GTA
[ENA]
¡û
>W1610612813
LGFD01000013
Euryarchaeota
Thermococcus sibiricus [LGFD]
9174
9097
-
Tyr
GTA
[ENA]
¡û
>W1610613042
LGFJ01000021
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
84
7
-
Tyr
GTA
[ENA]
¡û
>W1610613050
LGFJ01000043
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
9530
9453
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK