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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241245 (13 seq.)
>A171000203
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1385181
1385258
+
Gly
CCC
-
¡û
>A171003906
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
421216
421139
-
Gly
CCC
-
¡û
>A171004055
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1827927
1827850
-
Gly
CCC
-
¡û
>A171006579
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
889842
889919
+
Gly
CCC
-
¡û
>A171006673
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
867467
867390
-
Gly
CCC
-
¡û
>WENV170675976
LDZQ01001547
[LDZQ] terrestrial metagenome; oil reservoir sample I2
11912
11989
+
Gly
CCC
[ENA]
¢þ
>WENV170676191
LDZR01001524
[LDZR] terrestrial metagenome; oil reservoir sample K2
2547
2470
-
Gly
CCC
[ENA]
¢þ
>W1910200311
FJMQ01000081
Euryarchaeota
Thermococcus litoralis [FJMQ]
28929
29006
+
Gly
CCC
[ENA]
¡û
>W1910230001
FOIW01000003
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
209676
209753
+
Gly
CCC
[ENA]
¡û
>W1610004915
AHVB01000025
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
35951
36028
+
Gly
CCC
[ENA]
¡û
>W1610005564
AKID01000012
Euryarchaeota
Thermococcus sp. PK [AKID]
1860
1783
-
Gly
CCC
[ENA]
¡û
>W1610045156
BBBE01000001
Euryarchaeota
Thermococcus peptonophilus JCM 9653 [BBBE]
364999
364922
-
Gly
CCC
[ENA]
¡û
>W1610612438
LGET01000006
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
11912
11989
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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