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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241278 (105 seq.)
>W1710821567
LKTM01000365
Actinomycetota
Mycobacterium gordonae [LKTM]
14341
14267
-
Leu
TAA
[ENA]
¡û
>W1710879796
LMRX01000015
Actinomycetota
Mycobacterium sp. Soil538 [LMRX]
11309
11385
+
Leu
TAA
[ENA]
¡û
>W1711003875
LQIH01000001
Actinomycetota
Mycolicibacterium novocastrense GA-2613 [LQIH]
211944
211870
-
Leu
TAA
[ENA]
¡û
>W1711003943
LQII01000023
Actinomycetota
Mycolicibacterium novocastrense GA-2617 [LQII]
53193
53119
-
Leu
TAA
[ENA]
¡û
>W1711003970
LQIJ01000001
Actinomycetota
Mycolicibacterium novocastrense GA-2945b [LQIJ]
211901
211827
-
Leu
TAA
[ENA]
¡û
>W1711004134
LQIM01000023
Actinomycetota
Mycobacterium sp. IS-1556 [LQIM]
248450
248526
+
Leu
TAA
[ENA]
¡û
>W1711007124
LQOX01000086
Actinomycetota
Mycobacterium gastri [LQOX]
26574
26500
-
Leu
TAA
[ENA]
¡û
>W1711007644
LQPI01000023
Actinomycetota
Mycolicibacter nonchromogenicus nonchromogenicum [LQPI]
30380
30304
-
Leu
TAA
[ENA]
¡û
>W1711008375
LQPX01000045
Actinomycetota
Mycolicibacter terrae [LQPX]
162917
162843
-
Leu
TAA
[ENA]
¡û
>W1711172897
LWCM01000070
Actinomycetota
Mycobacterium persicum kansasii [LWCM]
100686
100612
-
Leu
TAA
[ENA]
¡û
>W1711173242
LWCS01000013
Actinomycetota
Mycolicibacterium iranicum [LWCS]
81640
81566
-
Leu
TAA
[ENA]
¡û
>W1711277752
LZJE01000289
Actinomycetota
Mycobacterium sp. E136 [LZJE]
5800
5724
-
Leu
TAA
[ENA]
¡û
>W1711277816
LZJF01000193
Actinomycetota
Mycobacterium sp. E3251 [LZJF]
3368
3444
+
Leu
TAA
[ENA]
¡û
>W1711280759
LZLQ01000026
Actinomycetota
Mycobacterium asiaticum [LZLQ]
24946
24870
-
Leu
TAA
[ENA]
¡û
>W1711280857
LZLS01000044
Actinomycetota
Mycobacterium asiaticum [LZLS]
14665
14741
+
Leu
TAA
[ENA]
¡û
>W1711285455
LZSH01000358
Actinomycetota
Mycobacteriaceae bacterium 1482268.1 1482268.1 [LZSH]
3058
2984
-
Leu
TAA
[ENA]
¡û
>W1711285667
LZSL01000079
Actinomycetota
Mycolicibacterium setense [LZSL]
28190
28266
+
Leu
TAA
[ENA]
¡û
>W1711285685
LZSM01000005
Actinomycetota
Mycolicibacterium elephantis 852014-51730_SCH5271717 [LZSM]
496380
496456
+
Leu
TAA
[ENA]
¡û
>W1711286160
LZSW01000027
Actinomycetota
Mycobacterium sp. 852014-52144_SCH5372336 [LZSW]
91083
91159
+
Leu
TAA
[ENA]
¡û
>W1711286213
LZSX01000032
Actinomycetota
Mycobacterium colombiense [LZSX]
25105
25029
-
Leu
TAA
[ENA]
¡û
>W1711286437
LZTB01000114
Actinomycetota
Mycobacterium sp. 852013-50091_SCH5140682 [LZTB]
110999
110925
-
Leu
TAA
[ENA]
¡û
>W1711772317
MVHH01000020
Actinomycetota
Mycolicibacter arupensis arupense [MVHH]
33933
34007
+
Leu
TAA
[ENA]
¡û
>W1711772958
MVHU01000049
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [MVHU]
5642
5718
+
Leu
TAA
[ENA]
¡û
>W1711773106
MVHY01000001
Actinomycetota
Mycobacteroides abscessus subsp. massiliense [MVHY]
1001132
1001056
-
Leu
TAA
[ENA]
¡û
>W1711773172
MVHZ01000009
Actinomycetota
Mycolicibacter minnesotensis minnesotense [MVHZ]
22842
22768
-
Leu
TAA
[ENA]
¡û
>W1711773780
MVIM01000008
Actinomycetota
Mycolicibacterium tusciae [MVIM]
155132
155208
+
Leu
TAA
[ENA]
¡û
>W1711792597
MWKV01000001
Actinomycetota
Mycobacterium persicum kansasii [MWKV]
1743251
1743177
-
Leu
TAA
[ENA]
¡û
>W1711795867
MWQA01000001
Actinomycetota
Mycobacterium persicum kansasii [MWQA]
1840800
1840726
-
Leu
TAA
[ENA]
¡û
>W1712004012
NEGO01000006
Actinomycetota
Mycobacteroides abscessus [NEGO]
673655
673731
+
Leu
TAA
[ENA]
¡û
>C171054946
CP017014
Actinomycetota
Rhodococcus sp. WMMA185 [CP017014]
469195
469269
+
Leu
TAA
-
¡û
>C171100671
CP019882
Actinomycetota
Mycolicibacterium litorale F4 [CP019882]
1158218
1158294
+
Leu
TAA
-
¡û
>W131087228
AOCJ01000088
Actinomycetota
Mycolicibacterium smegmatis MKD8 [AOCJ]
99063
98989
-
Leu
TAA
[ENA]
¡û
>W131169501
AREU01000003
Actinomycetota
Mycobacterium sp. 155 [AREU]
189065
189139
+
Leu
TAA
[ENA]
¡û
>WENV180344873
OBLL01296469
[OBLL] soil metagenome; soil
25
100
+
Leu
TAA
[ENA]
¢þ
>W141221077
AZYN01000257
Actinomycetota
Mycobacterium gastri 'Wayne' [AZYN]
1994
2068
+
Leu
TAA
[ENA]
¡û
>W141229704
BAOM01000013
Actinomycetota
Mycobacteroides abscessus subsp. bolletii CCUG 48898 = JCM 15300 [BAOM]
39025
39101
+
Leu
TAA
[ENA]
¡û
>W141284089
JALN02000001
Actinomycetota
Mycolicibacterium aromaticivorans JS19b1 = JCM 16368 [JALN]
3714581
3714655
+
Leu
TAA
[ENA]
¡û
>C08006615
CP000854
Actinomycetota
Mycobacterium marinum M [CP000854]
5470845
5470769
-
Leu
TAA
[Ensembl]
¡û
>WENV183627587
OOGL01014704
[OOGL] marine metagenome; sea ice
949
873
-
Leu
TAA
[ENA]
¢þ
>WENV170649676
JRYC01062789
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
201
276
+
Leu
TAA
[ENA]
¢þ
>C181226016
LT906469
Actinomycetota
Mycolicibacter terrae NCTC10856 [LT906469]
1041666
1041740
+
Leu
TAA
-
¡û
>C191139068
CP035319
Actinomycetota
Rhodococcus sp. ABRD24 [CP035319]
4065940
4066015
+
Leu
TAA
-
¡û
>C191147000
CP035923
Actinomycetota
Mycobacteroides abscessus subsp. massiliense GD01A [CP035923]
1157993
1158068
+
Leu
TAA
-
¡û
>C191147046
CP035924
Actinomycetota
Mycobacteroides abscessus subsp. massiliense GD01B [CP035924]
1157995
1158070
+
Leu
TAA
-
¡û
>C191193448
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
457122
457196
+
Leu
TAA
-
¡û
>C191208592
LR134356
Actinomycetota
Mycolicibacterium aurum NCTC10437 [LR134356]
4727569
4727494
-
Leu
TAA
-
¡û
>W1910403141
FVAP01000003
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 197 [FVAP]
714516
714441
-
Leu
TAA
[ENA]
¡û
>W1910407598
FVDR01000001
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 247 [FVDR]
182914
182989
+
Leu
TAA
[ENA]
¡û
>W1910408673
FVEM01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 312 [FVEM]
182918
182993
+
Leu
TAA
[ENA]
¡û
>W1910409879
FVFI01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 335 [FVFI]
714635
714560
-
Leu
TAA
[ENA]
¡û
>W1910411831
FVGW01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 911 [FVGW]
73309
73384
+
Leu
TAA
[ENA]
¡û
>W1910413139
FVHT01000001
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 943 [FVHT]
181778
181853
+
Leu
TAA
[ENA]
¡û
>W1910415485
FVJK01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 960 [FVJK]
820689
820614
-
Leu
TAA
[ENA]
¡û
>W1910415652
FVJN01000003
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 967 [FVJN]
181818
181893
+
Leu
TAA
[ENA]
¡û
>W1910419854
FVMM01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 995 [FVMM]
519654
519729
+
Leu
TAA
[ENA]
¡û
>W1910420704
FVNA01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 492 [FVNA]
714409
714334
-
Leu
TAA
[ENA]
¡û
>W1910424034
FVPH01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 1057 [FVPH]
881022
880947
-
Leu
TAA
[ENA]
¡û
>W1910424440
FVPO01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 1072 [FVPO]
181802
181877
+
Leu
TAA
[ENA]
¡û
>W1910429691
FVSY01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 474 [FVSY]
181806
181881
+
Leu
TAA
[ENA]
¡û
>W1910429792
FVTA01000003
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 478 [FVTA]
477120
477195
+
Leu
TAA
[ENA]
¡û
>W1910430676
FVTR01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 659 [FVTR]
936463
936538
+
Leu
TAA
[ENA]
¡û
>W1910432328
FVUY01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 651 [FVUY]
402398
402323
-
Leu
TAA
[ENA]
¡û
>W1910432698
FVVF01000001
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 635 [FVVF]
413539
413464
-
Leu
TAA
[ENA]
¡û
>W1910434782
FVWU01000007
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 598 [FVWU]
214585
214510
-
Leu
TAA
[ENA]
¡û
>W1910437133
FVYO01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 1164 [FVYO]
181701
181776
+
Leu
TAA
[ENA]
¡û
>W1910813992
MVIF01000106
Actinomycetota
Mycobacterium persicum AFPC-000227 [MVIF]
2757
2831
+
Leu
TAA
[ENA]
¡û
>W1910971965
NKCO01000004
Actinomycetota
Mycobacterium neumannii CECT 8766 [NKCO]
216601
216526
-
Leu
TAA
[ENA]
¡û
>W1911141097
NOZF01000115
Actinomycetota
Rhodococcus sp. 05-2254-6 [NOZF]
7199
7273
+
Leu
TAA
[ENA]
¡û
>W1810052743
PDCQ01000010
Actinomycetota
Mycolicibacterium duvalii IP141180004 [PDCQ]
82665
82741
+
Leu
TAA
[ENA]
¡û
>W1810070542
PECZ01000077
Actinomycetota
Mycobacterium marinum DE4381 [PECZ]
181652
181727
+
Leu
TAA
[ENA]
¡û
>W1810248440
PQBN01000020
Actinomycetota
Mycobacterium marinum E11 [PQBN]
25855
25930
+
Leu
TAA
[ENA]
¡û
>W1810326064
PUEV01000108
Actinomycetota
Mycolicibacter virginiensis GF75 [PUEV]
34774
34700
-
Leu
TAA
[ENA]
¡û
>W1810338835
PUTW01014407
Actinomycetota
Mycobacterium sp. ITM-2016-00317 [PUTW]
355
430
+
Leu
TAA
[ENA]
¡û
>W1810346456
PVBO01019923
Actinomycetota
Mycobacterium sp. ITM-2017-0098 [PVBO]
1161
1235
+
Leu
TAA
[ENA]
¡û
>W1510755044
CYSH01000007
Actinomycetota
Mycolicibacterium peregrinum CSUR P2098 [CYSH]
1212114
1212038
-
Leu
TAA
[ENA]
¡û
>W1511186295
JMET01000009
Actinomycetota
Rhodococcus fascians D188 [JMET]
442912
442986
+
Leu
TAA
[ENA]
¡û
>W1511350518
JRMK01000017
Actinomycetota
Mycobacterium sp. UM_Kg1 [JRMK]
43253
43327
+
Leu
TAA
[ENA]
¡û
>W1511352223
JROA01000001
Actinomycetota
Mycolicibacterium rufum JS14 [JROA]
4575928
4575852
-
Leu
TAA
[ENA]
¡û
>C121004718
CP003053
Actinomycetota
Mycolicibacterium chubuense NBB4 [CP003053]
4356620
4356544
-
Leu
TAA
[Ensembl]
¡û
>C161100495
CP016640
Actinomycetota
Mycobacterium sp. djl-10 [CP016640]
5287959
5287883
-
Leu
TAA
[Ensembl]
¡û
>W121023526
AHAR01000007
Actinomycetota
Mycobacteroides abscessus CCUG 48898 [AHAR]
134147
134223
+
Leu
TAA
[ENA]
¡û
>W1610048684
BBEH01000035
Actinomycetota
Rhodococcus sp. JCM 9793 [BBEH]
3441
3517
+
Leu
TAA
[ENA]
¡û
>W1610051273
BBGS01000018
Actinomycetota
Mycolicibacterium rufum JCM 16372 [BBGS]
82
158
+
Leu
TAA
[ENA]
¡û
>W1610070137
BCTA01000021
Actinomycetota
Mycolicibacterium novocastrense [BCTA]
66665
66739
+
Leu
TAA
[ENA]
¡û
>W1610685529
LKTM01000365
Actinomycetota
Mycobacterium gordonae [LKTM]
14341
14267
-
Leu
TAA
[ENA]
¡û
>W1610742142
LMRX01000015
Actinomycetota
Mycobacterium sp. Soil538 [LMRX]
11309
11385
+
Leu
TAA
[ENA]
¡û
>W1610854469
LQIH01000001
Actinomycetota
Mycolicibacterium novocastrense GA-2613 [LQIH]
211944
211870
-
Leu
TAA
[ENA]
¡û
>W1610854537
LQII01000023
Actinomycetota
Mycolicibacterium novocastrense GA-2617 [LQII]
53193
53119
-
Leu
TAA
[ENA]
¡û
>W1610854564
LQIJ01000001
Actinomycetota
Mycolicibacterium novocastrense GA-2945b [LQIJ]
211901
211827
-
Leu
TAA
[ENA]
¡û
>W1610854728
LQIM01000023
Actinomycetota
Mycobacterium sp. IS-1556 [LQIM]
248450
248526
+
Leu
TAA
[ENA]
¡û
>W1610981502
LWCM01000070
Actinomycetota
Mycobacterium persicum kansasii [LWCM]
100686
100612
-
Leu
TAA
[ENA]
¡û
>W1610981847
LWCS01000013
Actinomycetota
Mycolicibacterium iranicum [LWCS]
81640
81566
-
Leu
TAA
[ENA]
¡û
>W1611037037
LZJE01000289
Actinomycetota
Mycobacterium sp. E136 [LZJE]
5800
5724
-
Leu
TAA
[ENA]
¡û
>W1611037101
LZJF01000193
Actinomycetota
Mycobacterium sp. E3251 [LZJF]
3368
3444
+
Leu
TAA
[ENA]
¡û
>W1611040044
LZLQ01000026
Actinomycetota
Mycobacterium asiaticum [LZLQ]
24946
24870
-
Leu
TAA
[ENA]
¡û
>W1611040142
LZLS01000044
Actinomycetota
Mycobacterium asiaticum [LZLS]
14665
14741
+
Leu
TAA
[ENA]
¡û
>W1611043016
LZSH01000358
Actinomycetota
Mycobacteriaceae bacterium 1482268.1 1482268.1 [LZSH]
3058
2984
-
Leu
TAA
[ENA]
¡û
>W1611043228
LZSL01000079
Actinomycetota
Mycolicibacterium setense [LZSL]
28190
28266
+
Leu
TAA
[ENA]
¡û
>W1611043246
LZSM01000005
Actinomycetota
Mycolicibacterium elephantis 852014-51730_SCH5271717 [LZSM]
496380
496456
+
Leu
TAA
[ENA]
¡û
>W1611043721
LZSW01000027
Actinomycetota
Mycobacterium sp. 852014-52144_SCH5372336 [LZSW]
91083
91159
+
Leu
TAA
[ENA]
¡û
>W1611043774
LZSX01000032
Actinomycetota
Mycobacterium colombiense [LZSX]
25105
25029
-
Leu
TAA
[ENA]
¡û
>W1611043998
LZTB01000114
Actinomycetota
Mycobacterium sp. 852013-50091_SCH5140682 [LZTB]
110999
110925
-
Leu
TAA
[ENA]
¡û
>W1710045156
BBEH01000035
Actinomycetota
Rhodococcus sp. JCM 9793 [BBEH]
3441
3517
+
Leu
TAA
[ENA]
¡û
>W1710047672
BBGS01000018
Actinomycetota
Mycolicibacterium rufum JCM 16372 [BBGS]
82
158
+
Leu
TAA
[ENA]
¡û
>W1710067510
BCTA01000021
Actinomycetota
Mycolicibacterium novocastrense [BCTA]
66665
66739
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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