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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24146 (44 seq.)
>W1711579443
MNRT01000002
Bacillota
Clostridium sp. 29_15 [MNRT]
9557
9647
+
Ser
GCT
[ENA]
¡û
>W131252526
CBML010000007
Bacillota
Clostridium chauvoei JF4335 [CBML]
8295
8385
+
Ser
GCT
[ENA]
¡û
>C171131103
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
28611
28701
+
Ser
GCT
-
¡û
>WENV180098876
MTBK01272579
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1362
1272
-
Ser
GCT
[ENA]
¢þ
>WENV180433460
OBWJ01023177
[OBWJ] human gut metagenome; faeces
440
350
-
Ser
GCT
[ENA]
¢þ
>WENV180445112
OBXA01001552
[OBXA] human gut metagenome; faeces
5440
5350
-
Ser
GCT
[ENA]
¢þ
>WENV180476899
OBYZ01000044
[OBYZ] human gut metagenome; faeces
8083
8173
+
Ser
GCT
[ENA]
¢þ
>WENV180482637
OBZG01002689
[OBZG] human gut metagenome; faeces
910
1000
+
Ser
GCT
[ENA]
¢þ
>WENV180494446
OCAA01000264
[OCAA] human gut metagenome; faeces
47735
47645
-
Ser
GCT
[ENA]
¢þ
>WENV180599285
OCPP01000413
[OCPP] human gut metagenome; faeces
9718
9808
+
Ser
GCT
[ENA]
¢þ
>W141063552
APJA01000032
Bacillota
Clostridium intestinale URNW [APJA]
77812
77722
-
Ser
GCT
[ENA]
¡û
>W141063554
APJA01000032
Bacillota
Clostridium intestinale URNW [APJA]
76524
76434
-
Ser
GCT
[ENA]
¡û
>WENV181463772
OGEO01036629
[OGEO] metagenome; Human gut stool
642
552
-
Ser
GCT
[ENA]
¢þ
>WENV181676187
OGOP01042972
[OGOP] human gut metagenome; faeces
659
569
-
Ser
GCT
[ENA]
¢þ
>WENV181699061
OGPF01008297
[OGPF] human gut metagenome; faeces
156
246
+
Ser
GCT
[ENA]
¢þ
>WENV181707179
OGPL01009968
[OGPL] human gut metagenome; faeces
18
108
+
Ser
GCT
[ENA]
¢þ
>WENV181776779
OGRG01008250
[OGRG] human gut metagenome; faeces
54
144
+
Ser
GCT
[ENA]
¢þ
>WENV181800482
OGRY01036230
[OGRY] human gut metagenome; faeces
1233
1143
-
Ser
GCT
[ENA]
¢þ
>WENV181807770
OGSQ01000121
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
51736
51646
-
Ser
GCT
[ENA]
¢þ
>WENV181876616
OGXC01044508
[OGXC] human gut metagenome; faeces
432
342
-
Ser
GCT
[ENA]
¢þ
>WENV181981457
OHAG01002479
[OHAG] human gut metagenome; faeces
51
141
+
Ser
GCT
[ENA]
¢þ
>WENV182721157
OJPO01001951
[OJPO] human gut metagenome; stool sample
2977
2887
-
Ser
GCT
[ENA]
¢þ
>WENV182874633
OKRW01018932
[OKRW] human gut metagenome; faeces
1047
957
-
Ser
GCT
[ENA]
¢þ
>WENV183113039
OLNP01004657
[OLNP] human gut metagenome; faeces
908
818
-
Ser
GCT
[ENA]
¢þ
>WENV183114068
OLNP01101584
[OLNP] human gut metagenome; faeces
350
440
+
Ser
GCT
[ENA]
¢þ
>WENV183128176
OLNZ01002844
[OLNZ] human gut metagenome; faeces
8288
8198
-
Ser
GCT
[ENA]
¢þ
>WENV183132079
OLOB01000406
[OLOB] human gut metagenome; faeces
9649
9739
+
Ser
GCT
[ENA]
¢þ
>WENV183148081
OLON01009987
[OLON] human gut metagenome; faeces
219
309
+
Ser
GCT
[ENA]
¢þ
>WENV183187153
OLPO01007186
[OLPO] human gut metagenome; faeces
30
120
+
Ser
GCT
[ENA]
¢þ
>WENV183227747
OLQQ01001065
[OLQQ] human gut metagenome; faeces
11583
11493
-
Ser
GCT
[ENA]
¢þ
>WENV183234023
OLQV01009250
[OLQV] human gut metagenome; faeces
4140
4050
-
Ser
GCT
[ENA]
¢þ
>WENV183261091
OLRP01007538
[OLRP] human gut metagenome; faeces
3169
3079
-
Ser
GCT
[ENA]
¢þ
>WENV183327688
OLWA01001470
[OLWA] human gut metagenome; faeces
24220
24130
-
Ser
GCT
[ENA]
¢þ
>WENV183589572
OOCW01001601
[OOCW] human gut metagenome; human gut
14180
14090
-
Ser
GCT
[ENA]
¢þ
>WENV183596035
OODD01007728
[OODD] human gut metagenome; human gut
233
323
+
Ser
GCT
[ENA]
¢þ
>WENV183751429
PPYE01012640
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1859
1769
-
Ser
GCT
[ENA]
¢þ
>C181031724
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
28198
28288
+
Ser
GCT
-
¡û
>C181031953
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
28201
28291
+
Ser
GCT
-
¡û
>C191025593
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1769853
1769943
+
Ser
GCT
-
¡û
>C191051219
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
28611
28701
+
Ser
GCT
-
¡û
>C191123788
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
543946
544036
+
Ser
GCT
-
¡û
>W1710587168
FQXU01000012
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
137458
137368
-
Ser
GCT
[ENA]
¡û
>W1710587170
FQXU01000012
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
136171
136081
-
Ser
GCT
[ENA]
¡û
>W1710589432
FRAD01000030
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
10211
10121
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK