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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241472 (12 seq.)
>C171059848
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
2743510
2743435
-
Trp
CCA
-
¡û
>C171059905
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
619101
619026
-
Trp
CCA
-
¡û
>C000838
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4445508
4445433
-
Trp
CCA
[Ensembl]
¡û
>C000858
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4436914
4436839
-
Trp
CCA
[Ensembl]
¡û
>w017052
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1953
1881
-
Trp
CCA
[ENA]
¡û
>w010452
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
2077
2154
+
Trp
CCA
[ENA]
¡û
>w010432
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
5985
6062
+
Trp
CCA
[ENA]
¡û
>WENV180096552
MTBK01135504
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
814
739
-
Trp
CCA
[ENA]
¢þ
>C08000747
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2611306
2611234
-
Trp
CCA
[Ensembl]
¡û
>WENV183746085
POVV01007349
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
1346
1421
+
Trp
CCA
[ENA]
¢þ
>W1710506709
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
406
331
-
Trp
CCA
[ENA]
¡û
>W1710589058
FQZV01000020
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
69545
69470
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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