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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241571 (104 seq.)
>W1710947845
LOSQ01000004
Actinomycetota
Micrococcus sp. CH7 [LOSQ]
69300
69224
-
Met
CAT
[ENA]
¡û
>W1710995348
LQAC01000023
Actinomycetota
Micrococcus luteus [LQAC]
17139
17063
-
Met
CAT
[ENA]
¡û
>W1711098413
LTJO01000007
Actinomycetota
Rothia sp. HMSC064D08 [LTJO]
8380
8304
-
Met
CAT
[ENA]
¡û
>W1711110132
LTVG01000010
Actinomycetota
Rothia sp. HMSC036D11 [LTVG]
116925
116851
-
Met
CAT
[ENA]
¡û
>W1711113339
LTYF01000057
Actinomycetota
Micrococcus sp. HMSC067E09 [LTYF]
116185
116261
+
Met
CAT
[ENA]
¡û
>W1711185135
LWNC01000042
Actinomycetota
Rothia sp. HMSC08A08 [LWNC]
488
414
-
Met
CAT
[ENA]
¡û
>W1711318657
MAYP01000008
Actinomycetota
Micrococcus luteus [MAYP]
401719
401643
-
Met
CAT
[ENA]
¡û
>W1711938268
NAQZ01000068
Actinomycetota
Micrococcus luteus [NAQZ]
5123
5047
-
Met
CAT
[ENA]
¡û
>W131161269
AQXM01000051
Actinomycetota
Acaricomes phytoseiuli DSM 14247 [AQXM]
65044
65120
+
Met
CAT
[ENA]
¡û
>WENV180012033
FLSK01140518
[FLSK] metagenome; saliva
75
1
-
fMet
CAT
[ENA]
¢þ
>WENV180474888
OBYT01000128
[OBYT] human gut metagenome; faeces
4373
4299
-
fMet
CAT
[ENA]
¢þ
>WENV180731328
ODGW01000087
[ODGW] human metagenome; G_DNA_Supragingival plaque
10784
10710
-
fMet
CAT
[ENA]
¢þ
>WENV180732314
ODGY01000123
[ODGY] human metagenome; G_DNA_Supragingival plaque
25439
25513
+
fMet
CAT
[ENA]
¢þ
>WENV180750104
ODHS01000455
[ODHS] human metagenome; G_DNA_Supragingival plaque
9171
9097
-
fMet
CAT
[ENA]
¢þ
>WENV180750775
ODHS01007851
[ODHS] human metagenome; G_DNA_Supragingival plaque
3084
3010
-
fMet
CAT
[ENA]
¢þ
>WENV180751703
ODHS01116780
[ODHS] human metagenome; G_DNA_Supragingival plaque
312
388
+
fMet
CAT
[ENA]
¢þ
>WENV180764689
ODIB01000308
[ODIB] human metagenome; G_DNA_Supragingival plaque
15445
15519
+
fMet
CAT
[ENA]
¢þ
>WENV180777122
ODIL01000083
[ODIL] human metagenome; G_DNA_Supragingival plaque
9275
9201
-
fMet
CAT
[ENA]
¢þ
>WENV180777133
ODIL01000108
[ODIL] human metagenome; G_DNA_Supragingival plaque
5701
5625
-
fMet
CAT
[ENA]
¢þ
>WENV180777802
ODIL01108445
[ODIL] human metagenome; G_DNA_Supragingival plaque
75
1
-
fMet
CAT
[ENA]
¢þ
>WENV180787521
ODIS01007491
[ODIS] human metagenome; G_DNA_Supragingival plaque
4011
4085
+
fMet
CAT
[ENA]
¢þ
>WENV180803743
ODJG01000032
[ODJG] human metagenome; G_DNA_Supragingival plaque
44956
45032
+
fMet
CAT
[ENA]
¢þ
>WENV180803830
ODJG01000096
[ODJG] human metagenome; G_DNA_Supragingival plaque
22993
23067
+
fMet
CAT
[ENA]
¢þ
>WENV180813374
ODJO01000530
[ODJO] human metagenome; G_DNA_Supragingival plaque
770
696
-
fMet
CAT
[ENA]
¢þ
>WENV180824480
ODJX01009698
[ODJX] human metagenome; G_DNA_Supragingival plaque
1662
1588
-
fMet
CAT
[ENA]
¢þ
>WENV180832741
ODKC01003743
[ODKC] human metagenome; G_DNA_Supragingival plaque
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV180834136
ODKD01003842
[ODKD] human metagenome; G_DNA_Supragingival plaque
498
572
+
fMet
CAT
[ENA]
¢þ
>WENV180835442
ODKE01003420
[ODKE] human metagenome; G_DNA_Supragingival plaque
4246
4320
+
fMet
CAT
[ENA]
¢þ
>WENV180843229
ODKN01001114
[ODKN] human metagenome; G_DNA_Supragingival plaque
2939
2863
-
fMet
CAT
[ENA]
¢þ
>WENV180843339
ODKN01001976
[ODKN] human metagenome; G_DNA_Supragingival plaque
75
1
-
fMet
CAT
[ENA]
¢þ
>WENV180845555
ODKT01000807
[ODKT] human metagenome; G_DNA_Supragingival plaque
11424
11498
+
fMet
CAT
[ENA]
¢þ
>WENV180874900
ODLQ01010719
[ODLQ] human metagenome; G_DNA_Tongue dorsum
974
1050
+
fMet
CAT
[ENA]
¢þ
>WENV180882170
ODMB01032182
[ODMB] human metagenome; G_DNA_Buccal mucosa
353
279
-
fMet
CAT
[ENA]
¢þ
>WENV180888424
ODMN01000898
[ODMN] human metagenome; G_DNA_Supragingival plaque
5661
5585
-
fMet
CAT
[ENA]
¢þ
>WENV180891469
ODMQ01000270
[ODMQ] human metagenome; G_DNA_Supragingival plaque
75
1
-
fMet
CAT
[ENA]
¢þ
>WENV180930392
ODTO01030154
[ODTO] human metagenome; G_DNA_Buccal mucosa
109
33
-
fMet
CAT
[ENA]
¢þ
>WENV180933448
ODTR01000220
[ODTR] human metagenome; G_DNA_Supragingival plaque
25151
25225
+
fMet
CAT
[ENA]
¢þ
>WENV180933660
ODTR01001038
[ODTR] human metagenome; G_DNA_Supragingival plaque
10368
10442
+
fMet
CAT
[ENA]
¢þ
>WENV180943475
ODUC01000591
[ODUC] human metagenome; G_DNA_Supragingival plaque
10029
9955
-
fMet
CAT
[ENA]
¢þ
>WENV180944112
ODUC01008036
[ODUC] human metagenome; G_DNA_Supragingival plaque
265
189
-
fMet
CAT
[ENA]
¢þ
>WENV180958453
ODUL01005273
[ODUL] human metagenome; G_DNA_Supragingival plaque
3121
3047
-
fMet
CAT
[ENA]
¢þ
>WENV180980458
ODVE01000221
[ODVE] human metagenome; G_DNA_Supragingival plaque
5551
5477
-
fMet
CAT
[ENA]
¢þ
>WENV180980629
ODVE01000844
[ODVE] human metagenome; G_DNA_Supragingival plaque
12566
12642
+
fMet
CAT
[ENA]
¢þ
>WENV180984232
ODVF01189934
[ODVF] human metagenome; G_DNA_Supragingival plaque
1
75
+
fMet
CAT
[ENA]
¢þ
>WENV181004091
ODVX01093468
[ODVX] human metagenome; G_DNA_Supragingival plaque
364
290
-
fMet
CAT
[ENA]
¢þ
>WENV181008115
ODWE01002039
[ODWE] human metagenome; G_DNA_Supragingival plaque
6282
6358
+
fMet
CAT
[ENA]
¢þ
>WENV181008203
ODWE01002791
[ODWE] human metagenome; G_DNA_Supragingival plaque
3133
3059
-
fMet
CAT
[ENA]
¢þ
>WENV181019162
ODWU01000932
[ODWU] human metagenome; G_DNA_Supragingival plaque
13181
13255
+
fMet
CAT
[ENA]
¢þ
>WENV181019631
ODWU01007831
[ODWU] human metagenome; G_DNA_Supragingival plaque
3026
2952
-
fMet
CAT
[ENA]
¢þ
>WENV181020302
ODWU01107795
[ODWU] human metagenome; G_DNA_Supragingival plaque
78
152
+
fMet
CAT
[ENA]
¢þ
>WENV181049357
ODYD01000056
[ODYD] human metagenome; G_DNA_Supragingival plaque
6549
6625
+
fMet
CAT
[ENA]
¢þ
>WENV181063511
ODYP01001153
[ODYP] human metagenome; G_DNA_Supragingival plaque
15245
15319
+
fMet
CAT
[ENA]
¢þ
>WENV181064265
ODYP01016669
[ODYP] human metagenome; G_DNA_Supragingival plaque
1262
1336
+
fMet
CAT
[ENA]
¢þ
>WENV181069884
OEAE01000030
[OEAE] human metagenome; G_DNA_Supragingival plaque
34310
34384
+
fMet
CAT
[ENA]
¢þ
>WENV181070130
OEAE01000273
[OEAE] human metagenome; G_DNA_Supragingival plaque
25269
25345
+
fMet
CAT
[ENA]
¢þ
>WENV181076435
OEAP01005351
[OEAP] human metagenome; G_DNA_Supragingival plaque
390
466
+
fMet
CAT
[ENA]
¢þ
>WENV181082743
OEAV01000408
[OEAV] human metagenome; G_DNA_Supragingival plaque
579
503
-
fMet
CAT
[ENA]
¢þ
>WENV181082859
OEAV01000924
[OEAV] human metagenome; G_DNA_Supragingival plaque
84
8
-
fMet
CAT
[ENA]
¢þ
>WENV181121045
OEFL01000233
[OEFL] human metagenome; G_DNA_Supragingival plaque
75
1
-
fMet
CAT
[ENA]
¢þ
>WENV181121319
OEFL01002290
[OEFL] human metagenome; G_DNA_Supragingival plaque
823
749
-
fMet
CAT
[ENA]
¢þ
>WENV181123694
OEFQ01000397
[OEFQ] human metagenome; G_DNA_Supragingival plaque
3132
3058
-
fMet
CAT
[ENA]
¢þ
>WENV181123786
OEFQ01000907
[OEFQ] human metagenome; G_DNA_Supragingival plaque
75
1
-
fMet
CAT
[ENA]
¢þ
>WENV181135794
OEGI01000001
[OEGI] human metagenome; G_DNA_Supragingival plaque
818341
818265
-
fMet
CAT
[ENA]
¢þ
>WENV181137159
OEGJ01000509
[OEGJ] human metagenome; G_DNA_Supragingival plaque
103
29
-
fMet
CAT
[ENA]
¢þ
>WENV181143090
OEHM01000097
[OEHM] human metagenome; G_DNA_Supragingival plaque
71712
71788
+
fMet
CAT
[ENA]
¢þ
>WENV181152176
OEIA01000252
[OEIA] human metagenome; G_DNA_Supragingival plaque
24341
24417
+
fMet
CAT
[ENA]
¢þ
>WENV181160152
OEIK01002393
[OEIK] human metagenome; G_DNA_Supragingival plaque
6594
6668
+
fMet
CAT
[ENA]
¢þ
>WENV181177193
OEJS01000120
[OEJS] human metagenome; G_DNA_Supragingival plaque
14908
14832
-
fMet
CAT
[ENA]
¢þ
>WENV183508604
OMHE01003981
[OMHE] human oral metagenome; human oral
1034
1108
+
fMet
CAT
[ENA]
¢þ
>WENV183509338
OMHH01011945
[OMHH] human oral metagenome; human oral
518
592
+
fMet
CAT
[ENA]
¢þ
>WENV183729127
PJTQ01005891
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1832
1756
-
fMet
CAT
[ENA]
¢þ
>W141484372
JFYP01000166
Actinomycetota
Micrococcus luteus [JFYP]
6736
6812
+
Met
CAT
[ENA]
¡û
>W141484421
JFYQ01000083
Actinomycetota
Micrococcus luteus [JFYQ]
6508
6584
+
Met
CAT
[ENA]
¡û
>C181003349
AP017895
Actinomycetota
Rothia aeria JCM 11412 [AP017895]
2166889
2166815
-
Met
CAT
-
¡û
>C191042162
CP026366
Actinomycetota
Micrococcus luteus SB1254 [CP026366]
1748378
1748452
+
Met
CAT
-
¡û
>C191103244
CP033200
Actinomycetota
Micrococcus luteus SA211 [CP033200]
1324002
1323928
-
Met
CAT
-
¡û
>C191211717
LR134479
Actinomycetota
Rothia aeria NCTC10207 [LR134479]
1793657
1793583
-
Met
CAT
-
¡û
>W141776266
JOKP01000173
Actinomycetota
Micrococcus luteus [JOKP]
153
229
+
Met
CAT
[ENA]
¡û
>W1910377685
FUKP01000028
Actinomycetota
Micrococcus lylae 2B3F [FUKP]
57388
57462
+
Met
CAT
[ENA]
¡û
>W1910870854
NCWR01000006
Actinomycetota
Micrococcus luteus OG2 [NCWR]
76602
76676
+
Met
CAT
[ENA]
¡û
>W1910871028
NCWU01000008
Actinomycetota
Rothia dentocariosa OG2-1 [NCWU]
83100
83174
+
Met
CAT
[ENA]
¡û
>W1910872187
NDFM01000001
Actinomycetota
Rothia sp. Olga [NDFM]
410296
410370
+
Met
CAT
[ENA]
¡û
>W1911219355
NRSP01000001
Actinomycetota
Micrococcus luteus TYU2 [NRSP]
307106
307032
-
Met
CAT
[ENA]
¡û
>W1911595637
PNGM01000004
Actinomycetota
Micrococcus luteus UMB0189 [PNGM]
117334
117408
+
Met
CAT
[ENA]
¡û
>W1810054031
PDEV01000001
Actinomycetota
Rothia dentocariosa OG2-2 [PDEV]
810529
810455
-
Met
CAT
[ENA]
¡û
>W1810188870
PKIR01000001
Actinomycetota
Rothia dentocariosa UMB0083 [PKIR]
834956
834882
-
Met
CAT
[ENA]
¡û
>W1810190370
PKJU01000017
Actinomycetota
Micrococcus luteus UMB0031 [PKJU]
11333
11407
+
Met
CAT
[ENA]
¡û
>W1810190392
PKJV01000005
Actinomycetota
Micrococcus luteus UMB0867 [PKJV]
117563
117637
+
Met
CAT
[ENA]
¡û
>W1810720422
QNRG01000010
Actinomycetota
Micrococcus sp. KT16 [QNRG]
69869
69795
-
Met
CAT
[ENA]
¡û
>W1810913273
QVMY01000266
Actinomycetota
Micrococcus luteus ATCC 4698 [QVMY]
172
246
+
Met
CAT
[ENA]
¡û
>W10119282
ADVO01000018
Actinomycetota
Rothia dentocariosa ATCC 17931 [ADVO]
84158
84232
+
Met
CAT
[ENA]
¡û
>W10128131
AEGE01000765
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
4811
4735
-
Met
CAT
[ENA]
¡û
>W1511326114
JQHE01000001
Actinomycetota
Rothia aeria C6B [JQHE]
44839
44913
+
Met
CAT
[ENA]
¡û
>C11118560
CP002280
Actinomycetota
Rothia dentocariosa ATCC 17931 [CP002280]
95692
95618
-
Met
CAT
[Ensembl]
¡û
>W1511444042
JUTN01000200
Actinomycetota
Micrococcus luteus 773_MLUT [JUTN]
17640
17564
-
Met
CAT
[ENA]
¡û
>W11125502
ADVO01000018
Actinomycetota
Rothia dentocariosa ATCC 17931 [ADVO]
84158
84232
+
Met
CAT
[ENA]
¡û
>W1511446296
JUWU01000041
Actinomycetota
Rothia dentocariosa 694_RDEN [JUWU]
8061
7985
-
Met
CAT
[ENA]
¡û
>W1511471249
JVXS01000085
Actinomycetota
Rothia dentocariosa 1233_RDEN [JVXS]
356
282
-
Met
CAT
[ENA]
¡û
>W121062804
AJJQ01000049
Actinomycetota
Rothia aeria F0474 [AJJQ]
60700
60774
+
Met
CAT
[ENA]
¡û
>W1610803847
LOSQ01000004
Actinomycetota
Micrococcus sp. CH7 [LOSQ]
69300
69224
-
Met
CAT
[ENA]
¡û
>W1610850005
LQAC01000023
Actinomycetota
Micrococcus luteus [LQAC]
17139
17063
-
Met
CAT
[ENA]
¡û
>W1611062000
MAYP01000008
Actinomycetota
Micrococcus luteus [MAYP]
401719
401643
-
Met
CAT
[ENA]
¡û
>W1710592070
FRCE01000010
Actinomycetota
Micrococcus luteus [FRCE]
76293
76369
+
Met
CAT
[ENA]
¡û
>W1710622335
JNVR01001076
Actinomycetota
Rhodococcus rhodochrous [JNVR]
135
211
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK