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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241585 (41 seq.)
>W1710926278
LOED01000033
Bacillota
Fervidicola ferrireducens [LOED]
261
186
-
Thr
GGT
[ENA]
¡û
>W131218312
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
22989
22914
-
Thr
GGT
[ENA]
¡û
>WENV181226098
OFDK01000036
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
18383
18308
-
Thr
GGT
[ENA]
¢þ
>WENV181285355
OFGS01000027
[OFGS] hot springs metagenome; Water and soil
36034
36109
+
Thr
GGT
[ENA]
¢þ
>WENV181408313
OGCH01001682
[OGCH] hot springs metagenome; hot springs
1224
1299
+
Thr
GGT
[ENA]
¢þ
>W09113799
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
215190
215265
+
Thr
GGT
[ENA]
¡û
>C09100854
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1622072
1621997
-
Thr
GGT
[Ensembl]
¡û
>W1911155359
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1802448
1802373
-
Thr
GGT
[ENA]
¡û
>W1911244051
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
959903
959828
-
Thr
GGT
[ENA]
¡û
>W1911244099
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1339390
1339315
-
Thr
GGT
[ENA]
¡û
>W1911244140
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1892355
1892280
-
Thr
GGT
[ENA]
¡û
>W1911244176
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1198787
1198862
+
Thr
GGT
[ENA]
¡û
>W1911244209
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
607741
607816
+
Thr
GGT
[ENA]
¡û
>W1911572539
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1136963
1137038
+
Thr
GGT
[ENA]
¡û
>W1911572593
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2598730
2598655
-
Thr
GGT
[ENA]
¡û
>W1911572634
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1239948
1240023
+
Thr
GGT
[ENA]
¡û
>W1810052244
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
693996
694071
+
Thr
GGT
[ENA]
¡û
>W1810071892
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1183055
1183130
+
Thr
GGT
[ENA]
¡û
>W1810071941
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2200800
2200875
+
Thr
GGT
[ENA]
¡û
>W1810071995
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2524788
2524713
-
Thr
GGT
[ENA]
¡û
>W1810368020
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2387827
2387752
-
Thr
GGT
[ENA]
¡û
>C10103639
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1136760
1136835
+
Thr
GGT
[Ensembl]
¡û
>C11105209
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1231523
1231598
+
Thr
GGT
[Ensembl]
¡û
>C11105401
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1623785
1623710
-
Thr
GGT
[Ensembl]
¡û
>C11105434
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1349853
1349928
+
Thr
GGT
[Ensembl]
¡û
>C11105495
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1020891
1020816
-
Thr
GGT
[Ensembl]
¡û
>C11105876
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1399770
1399695
-
Thr
GGT
[Ensembl]
¡û
>W11139368
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
136903
136828
-
Thr
GGT
[ENA]
¡û
>W11139419
AEKC01000011
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
42001
42076
+
Thr
GGT
[ENA]
¡û
>W11139467
AEKD01000014
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
28722
28797
+
Thr
GGT
[ENA]
¡û
>W1511563969
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1790583
1790508
-
Thr
GGT
[ENA]
¡û
>W1610783771
LOED01000033
Bacillota
Fervidicola ferrireducens [LOED]
261
186
-
Thr
GGT
[ENA]
¡û
>W1710592731
FRCR01000010
Bacillota
Caldanaerovirga acetigignens [FRCR]
1331
1256
-
Thr
GGT
[ENA]
¡û
>W1710603742
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1681661
1681736
+
Thr
GGT
[ENA]
¡û
>W1710603840
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
775619
775544
-
Thr
GGT
[ENA]
¡û
>W1710603927
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1722455
1722380
-
Thr
GGT
[ENA]
¡û
>W1710605090
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
787578
787503
-
Thr
GGT
[ENA]
¡û
>W1710609664
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1600304
1600379
+
Thr
GGT
[ENA]
¡û
>W1710609702
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1001455
1001530
+
Thr
GGT
[ENA]
¡û
>W1710609771
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1894010
1893935
-
Thr
GGT
[ENA]
¡û
>W1710609817
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1886552
1886477
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK