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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241609 (61 seq.)
>W1711705083
MSQD01000001
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
103181
103106
-
Lys
CTT
[ENA]
¡û
>W131052008
AMYG01000065
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
441
366
-
Lys
CTT
[ENA]
¡û
>W131108943
APGP01000044
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
59386
59311
-
Lys
CTT
[ENA]
¡û
>W131218302
ATXO01000007
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
43407
43332
-
Lys
CTT
[ENA]
¡û
>W131218756
ATXZ01000012
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
138913
138838
-
Lys
CTT
[ENA]
¡û
>C006892
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
605764
605839
+
Lys
CTT
[Ensembl]
¡û
>W141067328
ASAA01000004
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
441367
441292
-
Lys
CTT
[ENA]
¡û
>WENV181226093
OFDK01000031
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
52206
52281
+
Lys
CTT
[ENA]
¢þ
>WENV181285368
OFGS01000054
[OFGS] hot springs metagenome; Water and soil
14647
14722
+
Lys
CTT
[ENA]
¢þ
>WENV181408501
OGCH01004143
[OGCH] hot springs metagenome; hot springs
2402
2477
+
Lys
CTT
[ENA]
¢þ
>W141193991
AYSN01000060
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
37245
37170
-
Lys
CTT
[ENA]
¡û
>W141238367
BBKT01000049
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
4302
4227
-
Lys
CTT
[ENA]
¡û
>W141276478
JADV01000007
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
61022
61097
+
Lys
CTT
[ENA]
¡û
>WENV170008022
AMZC01000288
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
2111
2036
-
Lys
CTT
[ENA]
¢þ
>C191131120
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2538894
2538819
-
Lys
CTT
-
¡û
>W09113833
ABYZ01000014
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
26424
26349
-
Lys
CTT
[ENA]
¡û
>C09100840
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2735265
2735190
-
Lys
CTT
[Ensembl]
¡û
>W1911155343
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2890247
2890172
-
Lys
CTT
[ENA]
¡û
>W1911244022
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1579126
1579201
+
Lys
CTT
[ENA]
¡û
>W1911244083
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2443333
2443258
-
Lys
CTT
[ENA]
¡û
>W1911244153
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
85319
85244
-
Lys
CTT
[ENA]
¡û
>W1911244160
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
131753
131828
+
Lys
CTT
[ENA]
¡û
>W1911244228
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2908029
2907954
-
Lys
CTT
[ENA]
¡û
>W1911572523
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
40796
40871
+
Lys
CTT
[ENA]
¡û
>W1911572606
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
782891
782816
-
Lys
CTT
[ENA]
¡û
>W1911572618
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
126630
126705
+
Lys
CTT
[ENA]
¡û
>W1810052257
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
2499136
2499211
+
Lys
CTT
[ENA]
¡û
>W1810071876
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
80749
80824
+
Lys
CTT
[ENA]
¡û
>W1810071925
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1113274
1113349
+
Lys
CTT
[ENA]
¡û
>W1810072008
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
708262
708187
-
Lys
CTT
[ENA]
¡û
>W1810368033
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
571433
571358
-
Lys
CTT
[ENA]
¡û
>W10120509
ADXD01000058
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
476
401
-
Lys
CTT
[ENA]
¡û
>C10103656
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2382488
2382413
-
Lys
CTT
[Ensembl]
¡û
>C11105195
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
285483
285558
+
Lys
CTT
[Ensembl]
¡û
>C11105371
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
95121
95196
+
Lys
CTT
[Ensembl]
¡û
>C11105420
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
358320
358395
+
Lys
CTT
[Ensembl]
¡û
>C11105480
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2376962
2376887
-
Lys
CTT
[Ensembl]
¡û
>C11105862
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
2316876
2316801
-
Lys
CTT
[Ensembl]
¡û
>C11123302
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
790237
790312
+
Lys
CTT
[Ensembl]
¡û
>W11127118
ADXD01000058
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
476
401
-
Lys
CTT
[ENA]
¡û
>W11139403
AEKB01000033
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
921
846
-
Lys
CTT
[ENA]
¡û
>W11139429
AEKC01000019
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
13891
13816
-
Lys
CTT
[ENA]
¡û
>W11139456
AEKD01000005
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
38880
38955
+
Lys
CTT
[ENA]
¡û
>W1511563982
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
72877
72802
-
Lys
CTT
[ENA]
¡û
>W1511563985
LACN01000001
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
180
255
+
Lys
CTT
[ENA]
¡û
>W1511563993
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
1261254
1261179
-
Lys
CTT
[ENA]
¡û
>W1511564039
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
538105
538180
+
Lys
CTT
[ENA]
¡û
>W1511570778
LAKY01000035
Bacillota
Clostridiales bacterium PH28_bin88 [LAKY]
3094
3169
+
Lys
CTT
[ENA]
¡û
>W11150457
AEVQ01000010
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
11720
11645
-
Lys
CTT
[ENA]
¡û
>W11150471
AEVQ01000056
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
627
552
-
Lys
CTT
[ENA]
¡û
>C121005074
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
2199801
2199726
-
Lys
CTT
[Ensembl]
¡û
>C121007637
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
2599256
2599181
-
Lys
CTT
[Ensembl]
¡û
>W1710584094
FQVH01000014
Bacillota
Caldanaerobius fijiensis DSM 17918 [FQVH]
10528
10453
-
Lys
CTT
[ENA]
¡û
>W1710603728
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
566850
566925
+
Lys
CTT
[ENA]
¡û
>W1710603826
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1890433
1890358
-
Lys
CTT
[ENA]
¡û
>W1710603911
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2843902
2843827
-
Lys
CTT
[ENA]
¡û
>W1710605076
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1900771
1900696
-
Lys
CTT
[ENA]
¡û
>W1710609650
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
491217
491292
+
Lys
CTT
[ENA]
¡û
>W1710609734
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
487261
487186
-
Lys
CTT
[ENA]
¡û
>W1710609784
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
87349
87274
-
Lys
CTT
[ENA]
¡û
>W1710609830
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
80094
80019
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK