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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241612 (110 seq.)
>W1710809821
LKEV01000007
Actinomycetota
Corynebacterium lowii [LKEV]
70087
70162
+
Lys
CTT
[ENA]
¡û
>W1711107354
LTSS01000040
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
4274
4201
-
Lys
CTT
[ENA]
¡û
>W131219760
ATYV01000002
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
209331
209406
+
Lys
CTT
[ENA]
¡û
>W131204397
ATBY01000013
Actinomycetota
Corynebacterium pyruviciproducens ATCC BAA-1742 [ATBY]
86832
86905
+
Lys
CTT
[ENA]
¡û
>W131160885
AQXB01000009
Actinomycetota
Corynebacterium mastitidis DSM 44356 [AQXB]
727
802
+
Lys
CTT
[ENA]
¡û
>WENV180697840
ODDE01006749
[ODDE] human metagenome; G_DNA_Supragingival plaque
1749
1822
+
Lys
CTT
[ENA]
¢þ
>WENV180721640
ODGL01004183
[ODGL] human metagenome; G_DNA_Subgingival plaque
1121
1048
-
Lys
CTT
[ENA]
¢þ
>WENV180725825
ODGS01003496
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
1606
1533
-
Lys
CTT
[ENA]
¢þ
>WENV180726597
ODGU01000153
[ODGU] human metagenome; G_DNA_Supragingival plaque
15690
15763
+
Lys
CTT
[ENA]
¢þ
>WENV180732310
ODGY01000118
[ODGY] human metagenome; G_DNA_Supragingival plaque
2276
2203
-
Lys
CTT
[ENA]
¢þ
>WENV180735839
ODHB01000953
[ODHB] human metagenome; G_DNA_Supragingival plaque
3204
3131
-
Lys
CTT
[ENA]
¢þ
>WENV180736342
ODHB01027664
[ODHB] human metagenome; G_DNA_Supragingival plaque
27
100
+
Lys
CTT
[ENA]
¢þ
>WENV180738719
ODHD01000374
[ODHD] human metagenome; G_DNA_Supragingival plaque
30186
30259
+
Lys
CTT
[ENA]
¢þ
>WENV180750465
ODHS01002535
[ODHS] human metagenome; G_DNA_Supragingival plaque
5373
5446
+
Lys
CTT
[ENA]
¢þ
>WENV180754775
ODHU01000804
[ODHU] human metagenome; G_DNA_Supragingival plaque
6487
6560
+
Lys
CTT
[ENA]
¢þ
>WENV180755109
ODHU01017152
[ODHU] human metagenome; G_DNA_Supragingival plaque
467
540
+
Lys
CTT
[ENA]
¢þ
>WENV180764667
ODIB01000263
[ODIB] human metagenome; G_DNA_Supragingival plaque
14169
14242
+
Lys
CTT
[ENA]
¢þ
>WENV180765854
ODID01003088
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
1421
1494
+
Lys
CTT
[ENA]
¢þ
>WENV180775067
ODIJ01193070
[ODIJ] human metagenome; G_DNA_Tongue dorsum
133
206
+
Lys
CTT
[ENA]
¢þ
>WENV180777706
ODIL01058144
[ODIL] human metagenome; G_DNA_Supragingival plaque
264
191
-
Lys
CTT
[ENA]
¢þ
>WENV180778195
ODIM01001311
[ODIM] human metagenome; G_DNA_Supragingival plaque
3638
3565
-
Lys
CTT
[ENA]
¢þ
>WENV180781551
ODIP01000670
[ODIP] human metagenome; G_DNA_Supragingival plaque
3260
3187
-
Lys
CTT
[ENA]
¢þ
>WENV180787748
ODIS01013711
[ODIS] human metagenome; G_DNA_Supragingival plaque
2271
2198
-
Lys
CTT
[ENA]
¢þ
>WENV180795282
ODIZ01083464
[ODIZ] human metagenome; G_DNA_Tongue dorsum
177
104
-
Lys
CTT
[ENA]
¢þ
>WENV180796165
ODJB01001693
[ODJB] human metagenome; G_DNA_Supragingival plaque
1682
1609
-
Lys
CTT
[ENA]
¢þ
>WENV180800484
ODJD01000045
[ODJD] human metagenome; G_DNA_Supragingival plaque
9804
9877
+
Lys
CTT
[ENA]
¢þ
>WENV180803596
ODJG01000001
[ODJG] human metagenome; G_DNA_Supragingival plaque
110228
110155
-
Lys
CTT
[ENA]
¢þ
>WENV180808746
ODJK01000842
[ODJK] human metagenome; G_DNA_Subgingival plaque
2925
2852
-
Lys
CTT
[ENA]
¢þ
>WENV180812891
ODJO01000001
[ODJO] human metagenome; G_DNA_Supragingival plaque
125847
125774
-
Lys
CTT
[ENA]
¢þ
>WENV180822213
ODJT01000082
[ODJT] human metagenome; G_DNA_Supragingival plaque
30058
29985
-
Lys
CTT
[ENA]
¢þ
>WENV180822976
ODJW01001450
[ODJW] human metagenome; G_DNA_Supragingival plaque
2493
2566
+
Lys
CTT
[ENA]
¢þ
>WENV180824397
ODJX01005274
[ODJX] human metagenome; G_DNA_Supragingival plaque
2171
2098
-
Lys
CTT
[ENA]
¢þ
>WENV180832559
ODKC01002274
[ODKC] human metagenome; G_DNA_Supragingival plaque
3962
3889
-
Lys
CTT
[ENA]
¢þ
>WENV180834258
ODKD01008049
[ODKD] human metagenome; G_DNA_Supragingival plaque
476
549
+
Lys
CTT
[ENA]
¢þ
>WENV180835355
ODKE01002395
[ODKE] human metagenome; G_DNA_Supragingival plaque
5141
5214
+
Lys
CTT
[ENA]
¢þ
>WENV180842202
ODKM01001941
[ODKM] human metagenome; G_DNA_Buccal mucosa
637
564
-
Lys
CTT
[ENA]
¢þ
>WENV180842867
ODKN01000042
[ODKN] human metagenome; G_DNA_Supragingival plaque
94157
94230
+
Lys
CTT
[ENA]
¢þ
>WENV180846228
ODKT01007114
[ODKT] human metagenome; G_DNA_Supragingival plaque
2964
3037
+
Lys
CTT
[ENA]
¢þ
>WENV180853204
ODKW01043270
[ODKW] human metagenome; G_DNA_Tongue dorsum
374
301
-
Lys
CTT
[ENA]
¢þ
>WENV180859045
ODLD01000001
[ODLD] human metagenome; G_DNA_Supragingival plaque
840572
840645
+
Lys
CTT
[ENA]
¢þ
>WENV180862354
ODLE01088154
[ODLE] human metagenome; G_DNA_Tongue dorsum
98
25
-
Lys
CTT
[ENA]
¢þ
>WENV180881320
ODMA01000003
[ODMA] human metagenome; G_DNA_Supragingival plaque
75474
75547
+
Lys
CTT
[ENA]
¢þ
>WENV180888081
ODMN01000043
[ODMN] human metagenome; G_DNA_Supragingival plaque
85411
85484
+
Lys
CTT
[ENA]
¢þ
>WENV180921285
ODTJ01000015
[ODTJ] human metagenome; G_DNA_Supragingival plaque
114279
114352
+
Lys
CTT
[ENA]
¢þ
>WENV180923508
ODTK01000007
[ODTK] human metagenome; G_DNA_Supragingival plaque
81053
80980
-
Lys
CTT
[ENA]
¢þ
>WENV180927525
ODTM01001036
[ODTM] human metagenome; G_DNA_Supragingival plaque
4352
4425
+
Lys
CTT
[ENA]
¢þ
>WENV180933745
ODTR01001942
[ODTR] human metagenome; G_DNA_Supragingival plaque
102
29
-
Lys
CTT
[ENA]
¢þ
>WENV180934689
ODTS01001170
[ODTS] human metagenome; G_DNA_Subgingival plaque
4656
4729
+
Lys
CTT
[ENA]
¢þ
>WENV180938546
ODTX01003076
[ODTX] human metagenome; G_DNA_Supragingival plaque
2782
2709
-
Lys
CTT
[ENA]
¢þ
>WENV180943551
ODUC01000925
[ODUC] human metagenome; G_DNA_Supragingival plaque
13602
13675
+
Lys
CTT
[ENA]
¢þ
>WENV180951270
ODUH01014918
[ODUH] human metagenome; G_DNA_Subgingival plaque
1772
1845
+
Lys
CTT
[ENA]
¢þ
>WENV180958277
ODUL01002003
[ODUL] human metagenome; G_DNA_Supragingival plaque
3162
3089
-
Lys
CTT
[ENA]
¢þ
>WENV180963854
ODUO01000009
[ODUO] human metagenome; G_DNA_Supragingival plaque
158573
158646
+
Lys
CTT
[ENA]
¢þ
>WENV180972678
ODUW01000036
[ODUW] human metagenome; G_DNA_Supragingival plaque
82693
82620
-
Lys
CTT
[ENA]
¢þ
>WENV180975280
ODUY01003911
[ODUY] human metagenome; G_DNA_Supragingival plaque
2222
2295
+
Lys
CTT
[ENA]
¢þ
>WENV180980258
ODVE01000006
[ODVE] human metagenome; G_DNA_Supragingival plaque
110070
110143
+
Lys
CTT
[ENA]
¢þ
>WENV180982722
ODVF01000382
[ODVF] human metagenome; G_DNA_Supragingival plaque
23338
23265
-
Lys
CTT
[ENA]
¢þ
>WENV180986944
ODVK01002268
[ODVK] human metagenome; G_DNA_Supragingival plaque
2371
2298
-
Lys
CTT
[ENA]
¢þ
>WENV180987363
ODVK01017877
[ODVK] human metagenome; G_DNA_Supragingival plaque
396
469
+
Lys
CTT
[ENA]
¢þ
>WENV180998012
ODVT01000001
[ODVT] human metagenome; G_DNA_Buccal mucosa
75
2
-
Lys
CTT
[ENA]
¢þ
>WENV181002068
ODVX01000010
[ODVX] human metagenome; G_DNA_Supragingival plaque
64547
64620
+
Lys
CTT
[ENA]
¢þ
>WENV181012574
ODWK01001519
[ODWK] human metagenome; G_DNA_Supragingival plaque
3196
3123
-
Lys
CTT
[ENA]
¢þ
>WENV181017555
ODWR01141938
[ODWR] human metagenome; G_DNA_Tongue dorsum
42
115
+
Lys
CTT
[ENA]
¢þ
>WENV181018864
ODWU01000146
[ODWU] human metagenome; G_DNA_Supragingival plaque
31710
31637
-
Lys
CTT
[ENA]
¢þ
>WENV181029372
ODXF01000201
[ODXF] human metagenome; G_DNA_Supragingival plaque
21794
21721
-
Lys
CTT
[ENA]
¢þ
>WENV181043123
ODXU01046761
[ODXU] human metagenome; G_DNA_Buccal mucosa
126
199
+
Lys
CTT
[ENA]
¢þ
>WENV181049527
ODYD01000485
[ODYD] human metagenome; G_DNA_Supragingival plaque
6954
7027
+
Lys
CTT
[ENA]
¢þ
>WENV181062890
ODYP01000001
[ODYP] human metagenome; G_DNA_Supragingival plaque
814751
814824
+
Lys
CTT
[ENA]
¢þ
>WENV181066754
ODZI01001466
[ODZI] human metagenome; G_DNA_Supragingival plaque
6035
5962
-
Lys
CTT
[ENA]
¢þ
>WENV181075982
OEAP01001011
[OEAP] human metagenome; G_DNA_Supragingival plaque
15063
15136
+
Lys
CTT
[ENA]
¢þ
>WENV181079160
OEAS01002542
[OEAS] human metagenome; G_DNA_Supragingival plaque
5992
5919
-
Lys
CTT
[ENA]
¢þ
>WENV181083720
OEAV01019456
[OEAV] human metagenome; G_DNA_Supragingival plaque
476
549
+
Lys
CTT
[ENA]
¢þ
>WENV181090107
OEBC01000001
[OEBC] human metagenome; G_DNA_Supragingival plaque
22935
22862
-
Lys
CTT
[ENA]
¢þ
>WENV181106566
OEEI01000001
[OEEI] human metagenome; G_DNA_Supragingival plaque
125832
125759
-
Lys
CTT
[ENA]
¢þ
>WENV181120287
OEFJ01019678
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
312
239
-
Lys
CTT
[ENA]
¢þ
>WENV181121132
OEFL01000611
[OEFL] human metagenome; G_DNA_Supragingival plaque
7920
7993
+
Lys
CTT
[ENA]
¢þ
>WENV181137240
OEGJ01000968
[OEGJ] human metagenome; G_DNA_Supragingival plaque
7671
7744
+
Lys
CTT
[ENA]
¢þ
>WENV181142997
OEHM01000038
[OEHM] human metagenome; G_DNA_Supragingival plaque
121900
121973
+
Lys
CTT
[ENA]
¢þ
>WENV181145862
OEHQ01000169
[OEHQ] human metagenome; G_DNA_Supragingival plaque
2954
2881
-
Lys
CTT
[ENA]
¢þ
>WENV181151944
OEIA01000001
[OEIA] human metagenome; G_DNA_Supragingival plaque
302306
302379
+
Lys
CTT
[ENA]
¢þ
>WENV181156160
OEIE01004319
[OEIE] human metagenome; G_DNA_Supragingival plaque
2127
2200
+
Lys
CTT
[ENA]
¢þ
>WENV181158745
OEIH01008647
[OEIH] human metagenome; G_DNA_Supragingival plaque
1587
1514
-
Lys
CTT
[ENA]
¢þ
>WENV181158879
OEIH01014340
[OEIH] human metagenome; G_DNA_Supragingival plaque
467
540
+
Lys
CTT
[ENA]
¢þ
>WENV181160028
OEIK01001462
[OEIK] human metagenome; G_DNA_Supragingival plaque
4287
4360
+
Lys
CTT
[ENA]
¢þ
>WENV181177132
OEJS01000020
[OEJS] human metagenome; G_DNA_Supragingival plaque
80849
80922
+
Lys
CTT
[ENA]
¢þ
>WENV181178961
OEJT01000731
[OEJT] human metagenome; G_DNA_Supragingival plaque
3890
3817
-
Lys
CTT
[ENA]
¢þ
>WENV181181550
OEJV01000001
[OEJV] human metagenome; G_DNA_Supragingival plaque
121796
121723
-
Lys
CTT
[ENA]
¢þ
>WENV183508091
OMHB01000247
[OMHB] human oral metagenome; human oral
1760
1833
+
Lys
CTT
[ENA]
¢þ
>WENV183508320
OMHC01003006
[OMHC] human oral metagenome; human oral
234
307
+
Lys
CTT
[ENA]
¢þ
>WENV183508714
OMHF01000500
[OMHF] human oral metagenome; human oral
164
237
+
Lys
CTT
[ENA]
¢þ
>WENV183509370
OMHI01000233
[OMHI] human oral metagenome; human oral
2225
2152
-
Lys
CTT
[ENA]
¢þ
>WENV183509636
OMHJ01002095
[OMHJ] human oral metagenome; human oral
493
420
-
Lys
CTT
[ENA]
¢þ
>WENV183509829
OMHK01000096
[OMHK] human oral metagenome; human oral
2589
2662
+
Lys
CTT
[ENA]
¢þ
>WENV183510243
OMHN01000297
[OMHN] human oral metagenome; human oral
1017
1090
+
Lys
CTT
[ENA]
¢þ
>WENV183510711
OMHQ01004067
[OMHQ] human oral metagenome; human oral
430
503
+
Lys
CTT
[ENA]
¢þ
>WENV183511009
OMHV01000774
[OMHV] human oral metagenome; human oral
702
775
+
Lys
CTT
[ENA]
¢þ
>WENV170689736
LFRM01308912
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1138
1213
+
Lys
CTT
[ENA]
¢þ
>C191209541
LR134377
Actinomycetota
Corynebacterium kutscheri NCTC949 [LR134377]
1297657
1297584
-
Lys
CTT
-
¡û
>C191209749
LR134381
Actinomycetota
Corynebacterium kutscheri NCTC11138 [LR134381]
89713
89640
-
Lys
CTT
-
¡û
>C191213025
LR134504
Actinomycetota
Corynebacterium matruchotii NCTC10206 [LR134504]
2713261
2713334
+
Lys
CTT
-
¡û
>W09119758
ACEB01000022
Actinomycetota
Corynebacterium matruchotii ATCC 33806 [ACEB]
82013
81938
-
Lys
CTT
[ENA]
¡û
>W09134388
ACSH01000019
Actinomycetota
Corynebacterium matruchotii ATCC 14266 [ACSH]
120020
119945
-
Lys
CTT
[ENA]
¡û
>W141733461
JNKV01000016
Actinomycetota
Corynebacterium vitaeruminis Ga6A13 [JNKV]
30680
30607
-
Lys
CTT
[ENA]
¡û
>W1911596532
PNHG01000001
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
90117
90190
+
Lys
CTT
[ENA]
¡û
>W1810187431
PKHO01000017
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
14214
14141
-
Lys
CTT
[ENA]
¡û
>W1810187432
PKHO01000017
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
14112
14039
-
Lys
CTT
[ENA]
¡û
>C151079785
CP011312
Actinomycetota
Corynebacterium kutscheri DSM 20755 [CP011312]
679625
679552
-
Lys
CTT
[Ensembl]
¡û
>C151084450
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
2179500
2179575
+
Lys
CTT
[Ensembl]
¡û
>W1610673876
LKEV01000007
Actinomycetota
Corynebacterium lowii [LKEV]
70087
70162
+
Lys
CTT
[ENA]
¡û
>W1710563024
FOPJ01000002
Actinomycetota
Corynebacterium spheniscorum [FOPJ]
83670
83595
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK