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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241679 (76 seq.)
>W1711455701
MJAF01000089
Actinomycetota
Streptomyces sp. EN16 [MJAF]
25469
25394
-
Glu
CTC
[ENA]
¡û
>W131185346
ARTQ01000114
Actinomycetota
Streptomyces canus 299MFChir4.1 [ARTQ]
92601
92528
-
Glu
CTC
[ENA]
¡û
>W131168616
ARED01000021
Actinomycetota
Streptomyces sp. HmicA12 [ARED]
30387
30460
+
Glu
CTC
[ENA]
¡û
>W131168985
AREJ01000024
Actinomycetota
Streptomyces sp. PsTaAH-124 [AREJ]
16211
16284
+
Glu
CTC
[ENA]
¡û
>WENV180023352
FTHV01001067
[FTHV] metagenome; soil
256
183
-
Glu
CTC
[ENA]
¢þ
>WENV180023353
FTHV01001067
[FTHV] metagenome; soil
142
69
-
Glu
CTC
[ENA]
¢þ
>WENV180033610
FTKL01000419
[FTKL] metagenome; soil
30910
30837
-
Glu
CTC
[ENA]
¢þ
>WENV180033611
FTKL01000419
[FTKL] metagenome; soil
30796
30721
-
Glu
CTC
[ENA]
¢þ
>WENV180033612
FTKL01000419
[FTKL] metagenome; soil
30650
30575
-
Glu
CTC
[ENA]
¢þ
>W141216292
AZUS01000026
Actinomycetota
Streptomyces sp. CNH189 [AZUS]
9257
9330
+
Glu
CTC
[ENA]
¡û
>C191020462
CP022545
Actinomycetota
Streptomyces sp. 11-1-2 [CP022545]
7673580
7673653
+
Glu
CTC
-
¡û
>C191091606
CP032543
Actinomycetota
Streptomyces griseus subsp. griseus ATCC 13273 [CP032543]
5508809
5508882
+
Glu
CTC
-
¡û
>C191181001
CP040654
Actinomycetota
Streptomyces sp. S6 [CP040654]
5878984
5879057
+
Glu
CTC
-
¡û
>C191181002
CP040654
Actinomycetota
Streptomyces sp. S6 [CP040654]
5879117
5879190
+
Glu
CTC
-
¡û
>C191181004
CP040654
Actinomycetota
Streptomyces sp. S6 [CP040654]
5879294
5879367
+
Glu
CTC
-
¡û
>W141730165
JNID01000008
Actinomycetota
Streptomyces sp. CNQ-525 [JNID]
163993
164068
+
Glu
CTC
[ENA]
¡û
>W141756378
JNXD01000012
Actinomycetota
Streptomyces flavovariabilis [JNXD]
112303
112376
+
Glu
CTC
[ENA]
¡û
>W141756581
JNXG01000016
Actinomycetota
Streptomyces atroolivaceus [JNXG]
8986
9059
+
Glu
CTC
[ENA]
¡û
>W141765286
JODG01000011
Actinomycetota
Streptomyces sp. NRRL S-813 [JODG]
152170
152097
-
Glu
CTC
[ENA]
¡û
>W141766987
JOEI01000009
Actinomycetota
Streptomyces scopuliridis RB72 [JOEI]
174585
174512
-
Glu
CTC
[ENA]
¡û
>W141766990
JOEI01000009
Actinomycetota
Streptomyces scopuliridis RB72 [JOEI]
174274
174201
-
Glu
CTC
[ENA]
¡û
>W141767538
JOER01000035
Actinomycetota
Kitasatospora aureofaciens [JOER]
63098
63025
-
Glu
CTC
[ENA]
¡û
>W141767539
JOER01000035
Actinomycetota
Kitasatospora aureofaciens [JOER]
62998
62925
-
Glu
CTC
[ENA]
¡û
>W141767540
JOER01000035
Actinomycetota
Kitasatospora aureofaciens [JOER]
62899
62826
-
Glu
CTC
[ENA]
¡û
>W141774149
JOIX01000018
Actinomycetota
Streptomyces sp. NRRL S-337 [JOIX]
37616
37689
+
Glu
CTC
[ENA]
¡û
>W141811119
JPWW01000022
Actinomycetota
Streptomyces sp. JS01 [JPWW]
9484
9558
+
Glu
CTC
[ENA]
¡û
>W1910618737
LJIW01000002
Actinomycetota
Streptomyces malaysiensis F913 [LJIW]
3953806
3953733
-
Glu
CTC
[ENA]
¡û
>W1910647380
LXWC01000250
Actinomycetota
Streptomyces sp. ST1015 [LXWC]
86
159
+
Glu
CTC
[ENA]
¡û
>W1910647382
LXWC01000250
Actinomycetota
Streptomyces sp. ST1015 [LXWC]
256
329
+
Glu
CTC
[ENA]
¡û
>W1910890375
NEUH01000572
Actinomycetota
Streptomyces sp. B226SN101 [NEUH]
41686
41613
-
Glu
CTC
[ENA]
¡û
>W1910890376
NEUH01000572
Actinomycetota
Streptomyces sp. B226SN101 [NEUH]
41551
41478
-
Glu
CTC
[ENA]
¡û
>W1910890378
NEUH01000572
Actinomycetota
Streptomyces sp. B226SN101 [NEUH]
41374
41301
-
Glu
CTC
[ENA]
¡û
>W1911279547
NTGN01000195
Actinomycetota
Streptomyces sp. wa1071 [NTGN]
300
373
+
Glu
CTC
[ENA]
¡û
>W1911279614
NTGO01000106
Actinomycetota
Streptomyces sp. wa1063 [NTGO]
12209
12136
-
Glu
CTC
[ENA]
¡û
>W1911279685
NTGP01000139
Actinomycetota
Streptomyces sp. wa1002 [NTGP]
6716
6789
+
Glu
CTC
[ENA]
¡û
>W1911280370
NTHA01000002
Actinomycetota
Streptomyces sp. or20 [NTHA]
11261
11334
+
Glu
CTC
[ENA]
¡û
>W1911280862
NTHH01000129
Actinomycetota
Streptomyces sp. f51 [NTHH]
12480
12407
-
Glu
CTC
[ENA]
¡û
>W1911280863
NTHH01000129
Actinomycetota
Streptomyces sp. f51 [NTHH]
12345
12272
-
Glu
CTC
[ENA]
¡û
>W1911280865
NTHH01000129
Actinomycetota
Streptomyces sp. f51 [NTHH]
12168
12095
-
Glu
CTC
[ENA]
¡û
>W1911280971
NTHJ01000013
Actinomycetota
Streptomyces sp. b84 [NTHJ]
118653
118580
-
Glu
CTC
[ENA]
¡û
>W1911498086
OCSW01000001
Actinomycetota
Streptomyces sp. OV198 [OCSW]
2682563
2682490
-
Glu
CTC
[ENA]
¡û
>W1911498087
OCSW01000001
Actinomycetota
Streptomyces sp. OV198 [OCSW]
2682428
2682355
-
Glu
CTC
[ENA]
¡û
>W1911534828
OLMK01000047
Actinomycetota
Streptomyces sp. MA5143a [OLMK]
11041
10968
-
Glu
CTC
[ENA]
¡û
>W1911775091
QXMJ01000072
Actinomycetota
Streptomyces sporangiiformans NEAU-SSA 1 [QXMJ]
43716
43643
-
Glu
CTC
[ENA]
¡û
>W1810089700
PGEW01000001
Actinomycetota
Streptomyces sp. CNZ306 [PGEW]
1080300
1080227
-
Glu
CTC
[ENA]
¡û
>W1810121415
PHUI01000001
Actinomycetota
Streptomyces sp. 69 [PHUI]
5526713
5526786
+
Glu
CTC
[ENA]
¡û
>W1810172045
PJME01000009
Actinomycetota
Streptomyces geranii A301 [PJME]
223406
223479
+
Glu
CTC
[ENA]
¡û
>W1810172046
PJME01000009
Actinomycetota
Streptomyces geranii A301 [PJME]
223541
223614
+
Glu
CTC
[ENA]
¡û
>W1810172048
PJME01000009
Actinomycetota
Streptomyces geranii A301 [PJME]
223749
223822
+
Glu
CTC
[ENA]
¡û
>W1810445316
PZKK01000011
Actinomycetota
Streptomyces sp. A244 [PZKK]
172435
172362
-
Glu
CTC
[ENA]
¡û
>W1810784538
QRAT01000001
Actinomycetota
Streptomyces sp. HB202 [QRAT]
1914183
1914110
-
Glu
CTC
[ENA]
¡û
>W1810784539
QRAT01000001
Actinomycetota
Streptomyces sp. HB202 [QRAT]
1914048
1913975
-
Glu
CTC
[ENA]
¡û
>W1810784541
QRAT01000001
Actinomycetota
Streptomyces sp. HB202 [QRAT]
1913871
1913798
-
Glu
CTC
[ENA]
¡û
>C151051033
CP009438
Actinomycetota
Streptomyces glaucescens GLA.O [CP009438]
5424359
5424432
+
Glu
CTC
[Ensembl]
¡û
>W1510014178
BBPO01000073
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
29662
29589
-
Glu
CTC
[ENA]
¡û
>W1510014179
BBPO01000073
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
29569
29496
-
Glu
CTC
[ENA]
¡û
>W1510014180
BBPO01000073
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
29476
29403
-
Glu
CTC
[ENA]
¡û
>C10112556
FN554889
Actinomycetota
Streptomyces scabiei 87.22 [FN554889]
3032503
3032430
-
Glu
CTC
[Ensembl]
¡û
>W1511310009
JPPZ01000276
Actinomycetota
Streptomyces stelliscabiei P3825 [JPPZ]
24368
24441
+
Glu
CTC
[ENA]
¡û
>W1511512661
JXUQ01000001
Actinomycetota
Streptomyces sp. MNU77 [JXUQ]
6084515
6084588
+
Glu
CTC
[ENA]
¡û
>W1511529099
JYJF01000163
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
26
101
+
Glu
CTC
[ENA]
¡û
>W1511529104
JYJF01000178
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
7527
7600
+
Glu
CTC
[ENA]
¡û
>W1511695032
LGCN01000265
Actinomycetota
Streptomyces caelestis NRRL B-24567 [LGCN]
172171
172244
+
Glu
CTC
[ENA]
¡û
>C161095555
CP016279
Actinomycetota
Streptomyces griseochromogenes ATCC 14511 [CP016279]
1917580
1917653
+
Glu
CTC
[Ensembl]
¡û
>W1610052154
BBHQ01001181
Actinomycetota
Streptomyces antibioticus JCM 4620 [BBHQ]
798
725
-
Glu
CTC
[ENA]
¡û
>C131014811
CP005080
Actinomycetota
Streptomyces microflavus DSM 40593 [CP005080]
4137508
4137435
-
Glu
CTC
[Ensembl]
¡û
>C131014812
CP005080
Actinomycetota
Streptomyces microflavus DSM 40593 [CP005080]
4137373
4137300
-
Glu
CTC
[Ensembl]
¡û
>W1610746441
LMWP01000020
Actinomycetota
Streptomyces corchorusii [LMWP]
193694
193621
-
Glu
CTC
[ENA]
¡û
>W1610746566
LMWR01000026
Actinomycetota
Streptomyces olivochromogenes [LMWR]
245697
245770
+
Glu
CTC
[ENA]
¡û
>W1610746567
LMWR01000026
Actinomycetota
Streptomyces olivochromogenes [LMWR]
245832
245905
+
Glu
CTC
[ENA]
¡û
>W1610746771
LMWU01000029
Actinomycetota
Streptomyces canus [LMWU]
178375
178448
+
Glu
CTC
[ENA]
¡û
>W1610895554
LRTR01000134
Actinomycetota
Streptomyces europaeiscabiei [LRTR]
14411
14338
-
Glu
CTC
[ENA]
¡û
>W1710048532
BBHQ01001181
Actinomycetota
Streptomyces antibioticus JCM 4620 [BBHQ]
798
725
-
Glu
CTC
[ENA]
¡û
>W1710569946
FOUV01000012
Actinomycetota
Streptomyces sp. cf124 [FOUV]
102012
102085
+
Glu
CTC
[ENA]
¡û
>W1710765685
LIPB01000001
Actinomycetota
Streptomyces sp. CB00072 [LIPB]
170460
170385
-
Glu
CTC
[ENA]
¡û
>W1710773284
LIVW01000001
Actinomycetota
Streptomyces sp. CB02115 [LIVW]
170218
170143
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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