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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241681 (15 seq.)
>WENV180095699
MTBK01083585
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
3955
4028
+
Ala
TGC
[ENA]
¢þ
>WENV180346432
OBLN01096899
[OBLN] sediment metagenome; sediment
168
241
+
Ala
TGC
[ENA]
¢þ
>At1199
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
405249
405321
+
Ala
TGC
[Ensembl]
¡û
>At1228
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
1015436
1015364
-
Ala
TGC
[Ensembl]
¡û
>At1243
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
1692126
1692054
-
Ala
TGC
[Ensembl]
¡û
>At1595
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
41348
41420
+
Ala
TGC
[Ensembl]
¡û
>At1629
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
1301010
1300938
-
Ala
TGC
[Ensembl]
¡û
>At1644
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
3501456
3501384
-
Ala
TGC
[Ensembl]
¡û
>At1645
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
3507540
3507468
-
Ala
TGC
[Ensembl]
¡û
>WENV170722351
LSQX01226309
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
912
839
-
Ala
TGC
[ENA]
¢þ
>WENV170977576
MTKZ01026776
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1043
1116
+
Ala
TGC
[ENA]
¢þ
>W1910635217
LMVO01000026
Euryarchaeota
Methanocorpusculum parvum XII [LMVO]
1948
2021
+
Ala
TGC
[ENA]
¡û
>W1911675929
QGMY01000013
Euryarchaeota
Methanospirillum lacunae Ki8-1 [QGMY]
1665
1738
+
Ala
TGC
[ENA]
¡û
>W1911675976
QGMZ01000048
Euryarchaeota
Methanospirillum stamsii Pt1 [QGMZ]
1626
1699
+
Ala
TGC
[ENA]
¡û
>W1610000163
AALU01000001
Euryarchaeota
Methanospirillum hungatei JF-1 [AALU]
190060
190133
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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