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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241814 (105 seq.)
>W1711139019
LVEP01000022
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
37196
37273
+
Pro
TGG
[ENA]
¡û
>W1711139023
LVEP01000024
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
496
421
-
Pro
TGG
[ENA]
¡û
>W1711146808
LVJE01000010
Bacteroidota
Flavobacterium fryxellicola [LVJE]
476412
476487
+
Pro
TGG
[ENA]
¡û
>W1711146829
LVJE01000033
Bacteroidota
Flavobacterium fryxellicola [LVJE]
143
66
-
Pro
TGG
[ENA]
¡û
>W1711712518
MTCA01000034
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
12351
12276
-
Pro
TGG
[ENA]
¡û
>W1711712535
MTCA01000081
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
12016
12093
+
Pro
TGG
[ENA]
¡û
>W1711751640
MUNX01000093
Bacteroidota
Flavobacterium sp. A45 [MUNX]
31406
31331
-
Pro
TGG
[ENA]
¡û
>W1711751649
MUNX01000136
Bacteroidota
Flavobacterium sp. A45 [MUNX]
342
419
+
Pro
TGG
[ENA]
¡û
>W1711966549
NCWQ01000043
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
1896
1819
-
Pro
TGG
[ENA]
¡û
>W1711966553
NCWQ01000046
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
45655
45732
+
Pro
TGG
[ENA]
¡û
>W1711966559
NCWQ01000062
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
48521
48444
-
Pro
TGG
[ENA]
¡û
>C171066032
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
2322880
2322805
-
Pro
TGG
-
¡û
>C171066036
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
1320336
1320259
-
Pro
TGG
-
¡û
>W131225402
AUDO01000001
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
238782
238859
+
Pro
TGG
[ENA]
¡û
>W131225416
AUDO01000007
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
114234
114157
-
Pro
TGG
[ENA]
¡û
>W131237962
AUSH01000084
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
170260
170183
-
Pro
TGG
[ENA]
¡û
>W131237968
AUSH01000086
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
97357
97280
-
Pro
TGG
[ENA]
¡û
>W141023457
AJXL01000023
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
2438
2515
+
Pro
TGG
[ENA]
¡û
>W141023475
AJXL01000074
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
336
413
+
Pro
TGG
[ENA]
¡û
>WENV180391031
OBPM01001901
[OBPM] marine metagenome; ENVO:00002010
1821
1896
+
Pro
TGG
[ENA]
¢þ
>WENV180593851
OCOY01000665
[OCOY] marine metagenome; ENVO:00002010
2642
2717
+
Pro
TGG
[ENA]
¢þ
>WENV181379484
OFRD01002164
[OFRD] wastewater metagenome; Exp Tend CN 100WW
903
978
+
Pro
TGG
[ENA]
¢þ
>WENV181383982
OFRH01003841
[OFRH] wastewater metagenome; Exp Tend NO 100WW
329
254
-
Pro
TGG
[ENA]
¢þ
>WENV170559350
CXWL01120152
[CXWL] groundwater metagenome; biofilm material
900
823
-
Pro
TGG
[ENA]
¢þ
>C181047415
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
1952141
1952216
+
Pro
TGG
-
¡û
>C181047431
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
3852120
3852045
-
Pro
TGG
-
¡û
>C191155234
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
3794529
3794604
+
Pro
TGG
-
¡û
>C191155238
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
3317262
3317185
-
Pro
TGG
-
¡û
>W141820225
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
3231758
3231681
-
Pro
TGG
[ENA]
¡û
>W141820243
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
166068
165991
-
Pro
TGG
[ENA]
¡û
>W1910808951
MUGT01000119
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
10839
10764
-
Pro
TGG
[ENA]
¡û
>W1910808959
MUGT01000149
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
3971
3896
-
Pro
TGG
[ENA]
¡û
>W1911564270
PCMW01000021
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
7679
7754
+
Pro
TGG
[ENA]
¡û
>W1911564279
PCMW01000032
Bacteroidota
Flavobacterium branchiophilum ATCC 35036 [PCMW]
120086
120161
+
Pro
TGG
[ENA]
¡û
>W1810072189
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
3120603
3120528
-
Pro
TGG
[ENA]
¡û
>W1810072206
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
27400
27325
-
Pro
TGG
[ENA]
¡û
>W1810089313
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
2832442
2832517
+
Pro
TGG
[ENA]
¡û
>W1810089354
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
2029217
2029142
-
Pro
TGG
[ENA]
¡û
>W1810121151
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
992999
993074
+
Pro
TGG
[ENA]
¡û
>W1810121200
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
48549
48474
-
Pro
TGG
[ENA]
¡û
>W1810156515
PJBJ01000022
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
430384
430459
+
Pro
TGG
[ENA]
¡û
>W1810156527
PJBJ01000028
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
264488
264563
+
Pro
TGG
[ENA]
¡û
>W1810265863
PQVG01000005
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
160725
160648
-
Pro
TGG
[ENA]
¡û
>W1810265875
PQVG01000011
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
5065
5142
+
Pro
TGG
[ENA]
¡û
>W1810365417
PVUB01000001
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
661032
661107
+
Pro
TGG
[ENA]
¡û
>W1810365420
PVUB01000001
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
38870
38795
-
Pro
TGG
[ENA]
¡û
>W1810533240
QCZH01000010
Bacteroidota
Flavobacterium laiguense LB2P30 [QCZH]
27422
27497
+
Pro
TGG
[ENA]
¡û
>W1810533260
QCZH01000025
Bacteroidota
Flavobacterium laiguense LB2P30 [QCZH]
48988
49063
+
Pro
TGG
[ENA]
¡û
>W1810533272
QCZI01000001
Bacteroidota
Flavobacterium psychrotolerans RB1R5 [QCZI]
188241
188316
+
Pro
TGG
[ENA]
¡û
>W1810533303
QCZI01000017
Bacteroidota
Flavobacterium psychrotolerans RB1R5 [QCZI]
9487
9562
+
Pro
TGG
[ENA]
¡û
>W1810576979
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
911313
911388
+
Pro
TGG
[ENA]
¡û
>W1810577031
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
59511
59436
-
Pro
TGG
[ENA]
¡û
>W1810684395
QKXH01000003
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
475415
475490
+
Pro
TGG
[ENA]
¡û
>W1810684405
QKXH01000007
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
189472
189547
+
Pro
TGG
[ENA]
¡û
>W1810722601
QNUX01000007
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
24018
23943
-
Pro
TGG
[ENA]
¡û
>W1810722603
QNUX01000008
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
112207
112282
+
Pro
TGG
[ENA]
¡û
>W1810723025
QNVY01000002
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
169581
169656
+
Pro
TGG
[ENA]
¡û
>W1810723037
QNVY01000003
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
430550
430475
-
Pro
TGG
[ENA]
¡û
>W1810763348
QQBA01000001
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
148112
148189
+
Pro
TGG
[ENA]
¡û
>W1810763380
QQBA01000018
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
47063
46988
-
Pro
TGG
[ENA]
¡û
>W1810885448
QUNI01000004
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
287786
287711
-
Pro
TGG
[ENA]
¡û
>W1810885454
QUNI01000006
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
139042
139117
+
Pro
TGG
[ENA]
¡û
>W1511390932
JSYM01000002
Bacteroidota
Flavobacterium sp. AED [JSYM]
465464
465541
+
Pro
TGG
[ENA]
¡û
>W1511390936
JSYM01000003
Bacteroidota
Flavobacterium sp. AED [JSYM]
144887
144810
-
Pro
TGG
[ENA]
¡û
>W1511391007
JSYO01000011
Bacteroidota
Flavobacterium sp. JRM [JSYO]
74470
74393
-
Pro
TGG
[ENA]
¡û
>W1511391021
JSYO01000024
Bacteroidota
Flavobacterium sp. JRM [JSYO]
39256
39333
+
Pro
TGG
[ENA]
¡û
>W1511391082
JSYP01000004
Bacteroidota
Flavobacterium sp. KMS [JSYP]
166465
166542
+
Pro
TGG
[ENA]
¡û
>W1511391085
JSYP01000007
Bacteroidota
Flavobacterium sp. KMS [JSYP]
114300
114223
-
Pro
TGG
[ENA]
¡û
>C121017008
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1500395
1500470
+
Pro
TGG
[Ensembl]
¡û
>C121017026
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1930668
1930591
-
Pro
TGG
[Ensembl]
¡û
>W121034183
AHKF01000005
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
12929
12852
-
Pro
TGG
[ENA]
¡û
>W121034216
AHKF01000020
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
209217
209294
+
Pro
TGG
[ENA]
¡û
>W1610950027
LVEP01000022
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
37196
37273
+
Pro
TGG
[ENA]
¡û
>W1610950031
LVEP01000024
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
496
421
-
Pro
TGG
[ENA]
¡û
>W1610957705
LVJE01000010
Bacteroidota
Flavobacterium fryxellicola [LVJE]
476412
476487
+
Pro
TGG
[ENA]
¡û
>W1610957726
LVJE01000033
Bacteroidota
Flavobacterium fryxellicola [LVJE]
143
66
-
Pro
TGG
[ENA]
¡û
>WENV080151
AATO01009308
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
559
638
+
Pro
TGG
[ENA]
>W1710517094
FNDB01000002
Bacteroidota
Flavobacterium omnivorum [FNDB]
321410
321333
-
Pro
TGG
[ENA]
¡û
>W1710517110
FNDB01000011
Bacteroidota
Flavobacterium omnivorum [FNDB]
81868
81945
+
Pro
TGG
[ENA]
¡û
>W1710528017
FNMV01000002
Bacteroidota
Flavobacterium degerlachei [FNMV]
1528
1451
-
Pro
TGG
[ENA]
¡û
>W1710528038
FNMV01000011
Bacteroidota
Flavobacterium degerlachei [FNMV]
145611
145534
-
Pro
TGG
[ENA]
¡û
>W1710533474
FNRD01000003
Bacteroidota
Flavobacterium gillisiae [FNRD]
262117
262040
-
Pro
TGG
[ENA]
¡û
>W1710533487
FNRD01000011
Bacteroidota
Flavobacterium gillisiae [FNRD]
133620
133697
+
Pro
TGG
[ENA]
¡û
>W1710539688
FNVP01000008
Bacteroidota
Flavobacterium urumqiense [FNVP]
48523
48600
+
Pro
TGG
[ENA]
¡û
>W1710539694
FNVP01000017
Bacteroidota
Flavobacterium urumqiense [FNVP]
36603
36526
-
Pro
TGG
[ENA]
¡û
>W1710548156
FODN01000004
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
166681
166604
-
Pro
TGG
[ENA]
¡û
>W1710548163
FODN01000005
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
151366
151289
-
Pro
TGG
[ENA]
¡û
>W1710551328
FOFZ01000003
Bacteroidota
Flavobacterium frigoris [FOFZ]
242140
242063
-
Pro
TGG
[ENA]
¡û
>W1710551346
FOFZ01000016
Bacteroidota
Flavobacterium frigoris [FOFZ]
77018
77095
+
Pro
TGG
[ENA]
¡û
>W1710560756
FONQ01000004
Bacteroidota
Flavobacterium xueshanense [FONQ]
27321
27244
-
Pro
TGG
[ENA]
¡û
>W1710560759
FONQ01000006
Bacteroidota
Flavobacterium xueshanense [FONQ]
88443
88518
+
Pro
TGG
[ENA]
¡û
>W1710585068
FQWB01000003
Bacteroidota
Flavobacterium fluvii [FQWB]
277677
277600
-
Pro
TGG
[ENA]
¡û
>W1710585073
FQWB01000005
Bacteroidota
Flavobacterium fluvii [FQWB]
189020
188943
-
Pro
TGG
[ENA]
¡û
>W1710585187
FQWE01000001
Bacteroidota
Flavobacterium segetis [FQWE]
436947
437024
+
Pro
TGG
[ENA]
¡û
>W1710585192
FQWE01000001
Bacteroidota
Flavobacterium segetis [FQWE]
5673
5598
-
Pro
TGG
[ENA]
¡û
>W1710585230
FQWF01000002
Bacteroidota
Flavobacterium micromati [FQWF]
188412
188335
-
Pro
TGG
[ENA]
¡û
>W1710585232
FQWF01000004
Bacteroidota
Flavobacterium micromati [FQWF]
23256
23331
+
Pro
TGG
[ENA]
¡û
>W1710585701
FQWO01000001
Bacteroidota
Flavobacterium granuli [FQWO]
661032
661109
+
Pro
TGG
[ENA]
¡û
>W1710585704
FQWO01000001
Bacteroidota
Flavobacterium granuli [FQWO]
38870
38793
-
Pro
TGG
[ENA]
¡û
>W1710591538
FRBU01000001
Bacteroidota
Flavobacterium xanthum [FRBU]
61405
61482
+
Pro
TGG
[ENA]
¡û
>W1710591579
FRBU01000081
Bacteroidota
Flavobacterium xanthum [FRBU]
760
683
-
Pro
TGG
[ENA]
¡û
>W1710592431
FRCL01000011
Bacteroidota
Flavobacterium xinjiangense [FRCL]
62751
62674
-
Pro
TGG
[ENA]
¡û
>W1710592437
FRCL01000018
Bacteroidota
Flavobacterium xinjiangense [FRCL]
2712
2789
+
Pro
TGG
[ENA]
¡û
>W1710593390
FRDK01000002
Bacteroidota
Flavobacterium fryxellicola [FRDK]
91752
91677
-
Pro
TGG
[ENA]
¡û
>W1710593407
FRDK01000013
Bacteroidota
Flavobacterium fryxellicola [FRDK]
539
462
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK