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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24189 (68 seq.)
>W1711069423
LSFP01000005
Alphaproteobacteria
Zymomonas mobilis [LSFP]
254687
254598
-
Ser
CGA
[ENA]
¡û
>W1711072510
LSHQ01000061
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
101223
101134
-
Ser
CGA
[ENA]
¡û
>W1711072758
LSHX01000010
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
84083
83994
-
Ser
CGA
[ENA]
¡û
>W1711073046
LSIE01000077
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
10248
10159
-
Ser
CGA
[ENA]
¡û
>W1711073262
LSIJ01000061
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
51070
50981
-
Ser
CGA
[ENA]
¡û
>W1711073967
LSJC01000052
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
10133
10044
-
Ser
CGA
[ENA]
¡û
>W1711075118
LSKD01000015
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
19573
19484
-
Ser
CGA
[ENA]
¡û
>W1711075313
LSKH01000234
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
38426
38515
+
Ser
CGA
[ENA]
¡û
>W1711075342
LSKI01000061
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
26482
26571
+
Ser
CGA
[ENA]
¡û
>W1711075610
LSKO01001411
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
10188
10099
-
Ser
CGA
[ENA]
¡û
>W1711075666
LSKP01000084
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
8284
8373
+
Ser
CGA
[ENA]
¡û
>W1711501469
MKRR01000113
Alphaproteobacteria
Sphingomonas sp. 66-10 [MKRR]
6770
6859
+
Ser
CGA
[ENA]
¡û
>W1711632193
MPSB01000003
Alphaproteobacteria
Sphingomonas jeddahensis G39 [MPSB]
361086
361175
+
Ser
CGA
[ENA]
¡û
>W1711942696
NBBI01000005
Alphaproteobacteria
Sphingomonas dokdonensis [NBBI]
2761
2672
-
Ser
CGA
[ENA]
¡û
>C171032900
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
1753589
1753500
-
Ser
CGA
-
¡û
>C171032924
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
949810
949899
+
Ser
CGA
-
¡û
>C171033131
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
291654
291565
-
Ser
CGA
-
¡û
>C171115148
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1800795
1800884
+
Ser
CGA
-
¡û
>W131046825
AMSR01000019
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
5298
5387
+
Ser
CGA
[ENA]
¡û
>C027948
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1511812
1511723
-
Ser
CGA
[Ensembl]
¡û
>WENV180028285
FTJA01047953
[FTJA] metagenome; soil
234
145
-
Ser
CGA
[ENA]
¢þ
>WENV181402402
OFTY01001142
[OFTY] sludge metagenome; sludge
6822
6911
+
Ser
CGA
[ENA]
¢þ
>W141200334
AYXS01000001
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
463383
463294
-
Ser
CGA
[ENA]
¡û
>W141226076
BAJT01000009
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
95968
96057
+
Ser
CGA
[ENA]
¡û
>W141226143
BAJV01000002
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
105676
105765
+
Ser
CGA
[ENA]
¡û
>W141227249
BAKW01000003
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
229243
229154
-
Ser
CGA
[ENA]
¡û
>W141247929
CBLX010000009
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
103035
103124
+
Ser
CGA
[ENA]
¡û
>WENV182547941
OJBU01003376
[OJBU] seawater metagenome; Sea water
1926
1837
-
Ser
CGA
[ENA]
¢þ
>WENV170009766
APMI01002732
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2838
2749
-
Ser
CGA
[ENA]
¢þ
>WENV170576345
FRDC01000414
[FRDC] freshwater metagenome; water
14794
14705
-
Ser
CGA
[ENA]
¢þ
>WENV171003233
NNBT01002681
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
22694
22783
+
Ser
CGA
[ENA]
¢þ
>C181088884
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1527587
1527498
-
Ser
CGA
-
¡û
>C181088935
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1520171
1520082
-
Ser
CGA
-
¡û
>C181089262
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1514172
1514083
-
Ser
CGA
-
¡û
>C191145609
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1511771
1511682
-
Ser
CGA
-
¡û
>C191145660
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1511771
1511682
-
Ser
CGA
-
¡û
>C191145711
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1511771
1511682
-
Ser
CGA
-
¡û
>C191157886
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
209703
209614
-
Ser
CGA
-
¡û
>W09133956
ACQU01000003
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
76435
76524
+
Ser
CGA
[ENA]
¡û
>W141726092
JNAB01000023
Alphaproteobacteria
Kozakia baliensis [JNAB]
9392
9481
+
Ser
CGA
[ENA]
¡û
>W1910182425
BJMW01000011
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
53227
53316
+
Ser
CGA
[ENA]
¡û
>W1910182476
BJMX01000012
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
11766
11677
-
Ser
CGA
[ENA]
¡û
>C141008806
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1870769
1870858
+
Ser
CGA
[Ensembl]
¡û
>W1911247244
NSLI01000002
Alphaproteobacteria
Sphingomonas lenta 1PNM-20 [NSLI]
309773
309684
-
Ser
CGA
[ENA]
¡û
>W1911597843
PNQZ01000064
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
38363
38274
-
Ser
CGA
[ENA]
¡û
>W1911653529
QDFX01000013
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
100849
100938
+
Ser
CGA
[ENA]
¡û
>W1911719073
QQWW01000005
Alphaproteobacteria
Sphingomonas sp. ABOLG ABOLG S-NIH.Pt13_0512 [QQWW]
277516
277605
+
Ser
CGA
[ENA]
¡û
>W1911765798
QXDC01000003
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
77048
76959
-
Ser
CGA
[ENA]
¡û
>W1810586284
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
566310
566221
-
Ser
CGA
[ENA]
¡û
>C151004608
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1883747
1883836
+
Ser
CGA
[Ensembl]
¡û
>C151004659
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
1884349
1884438
+
Ser
CGA
[Ensembl]
¡û
>C10114592
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
1989475
1989564
+
Ser
CGA
[Ensembl]
¡û
>C11124232
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1876362
1876451
+
Ser
CGA
[Ensembl]
¡û
>C121003152
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1889498
1889587
+
Ser
CGA
[Ensembl]
¡û
>C121015266
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1834207
1834296
+
Ser
CGA
[Ensembl]
¡û
>C161001079
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
1155398
1155487
+
Ser
CGA
[Ensembl]
¡û
>W1610909951
LSFP01000005
Alphaproteobacteria
Zymomonas mobilis [LSFP]
254687
254598
-
Ser
CGA
[ENA]
¡û
>W1610911770
LSHQ01000061
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
101223
101134
-
Ser
CGA
[ENA]
¡û
>W1610912018
LSHX01000010
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
84083
83994
-
Ser
CGA
[ENA]
¡û
>W1610912351
LSIE01000077
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
10248
10159
-
Ser
CGA
[ENA]
¡û
>W1610912567
LSIJ01000061
Alphaproteobacteria
Sphingomonas sp. CCH10-B3 [LSIJ]
51070
50981
-
Ser
CGA
[ENA]
¡û
>W1610913272
LSJC01000052
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
10133
10044
-
Ser
CGA
[ENA]
¡û
>W1610914423
LSKD01000015
Alphaproteobacteria
Sphingomonas sp. CCH19-C6 [LSKD]
19573
19484
-
Ser
CGA
[ENA]
¡û
>W1610914618
LSKH01000234
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
38426
38515
+
Ser
CGA
[ENA]
¡û
>W1610914647
LSKI01000061
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
26482
26571
+
Ser
CGA
[ENA]
¡û
>W1610914915
LSKO01001411
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
10188
10099
-
Ser
CGA
[ENA]
¡û
>W1610914971
LSKP01000084
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
8284
8373
+
Ser
CGA
[ENA]
¡û
>W1710542344
FNZB01000003
Alphaproteobacteria
Sphingomonas sp. OV641 [FNZB]
416587
416676
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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