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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24223 (29 seq.)
>w024849
AAZB01000011
Thermotogota
Petrotoga mobilis SJ95 [AAZB]
28119
28210
+
Leu
CAA
[ENA]
¡û
>WENV180098662
MTBK01259977
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1441
1530
+
Leu
CAA
[ENA]
¢þ
>C08007593
CP000879
Thermotogota
Petrotoga mobilis SJ95 [CP000879]
632442
632356
-
Leu
CAA
[Ensembl]
¡û
>WENV170561778
CZCB01000033
[CZCB] anaerobic digester metagenome; anaerobic digester
49997
50086
+
Leu
CAA
[ENA]
¢þ
>WENV170643613
JMBV01000004
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
33741
33652
-
Leu
CAA
[ENA]
¢þ
>WENV170644936
JMBX01000281
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
1071
982
-
Leu
CAA
[ENA]
¢þ
>WENV170677190
LDZT01003609
[LDZT] terrestrial metagenome; oil reservoir sample SB1
5453
5542
+
Leu
CAA
[ENA]
¢þ
>WENV170684585
LFRM01047471
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
14260
14171
-
Leu
CAA
[ENA]
¢þ
>WENV170723095
LSQX01254778
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
14260
14171
-
Leu
CAA
[ENA]
¢þ
>WENV170779045
LZCG01000166
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
11064
11153
+
Leu
CAA
[ENA]
¢þ
>WENV170968103
MTKW01006126
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
16027
15938
-
Leu
CAA
[ENA]
¢þ
>W1910002767
ATNS01000003
Thermotogota
Petrotoga sp. HWH.PT.55.6.1 [ATNS]
63266
63355
+
Leu
CAA
[ENA]
¡û
>W1910002917
AUPM01000018
Thermotogota
Petrotoga sp. 9PW.55.5.1 [AUPM]
63086
62997
-
Leu
CAA
[ENA]
¡û
>W1910006050
AZRI01000041
Thermotogota
Petrotoga sp. 9T1HF07.CasAA.8.2 [AZRI]
32729
32640
-
Leu
CAA
[ENA]
¡û
>W1910006068
AZRJ01000009
Thermotogota
Petrotoga sp. HWHPT.55.6.3 [AZRJ]
149732
149821
+
Leu
CAA
[ENA]
¡û
>W1910006124
AZRK01000012
Thermotogota
Petrotoga sp. 9PWA.NaAc.5.4 [AZRK]
140689
140600
-
Leu
CAA
[ENA]
¡û
>W1910006168
AZRL01000012
Thermotogota
Petrotoga olearia DSM 13574 [AZRL]
266038
266127
+
Leu
CAA
[ENA]
¡û
>W1910006214
AZRM01000016
Thermotogota
Petrotoga miotherma DSM 10691 [AZRM]
27969
27880
-
Leu
CAA
[ENA]
¡û
>W1910006276
AZRN01000034
Thermotogota
Petrotoga mexicana DSM 14811 [AZRN]
272301
272390
+
Leu
CAA
[ENA]
¡û
>W1910563541
JAHC01000019
Thermotogota
Petrotoga sibirica DSM 13575 [JAHC]
1552
1641
+
Leu
CAA
[ENA]
¡û
>W1910563574
JAIP01000008
Thermotogota
Petrotoga sp. SL27 [JAIP]
47487
47398
-
Leu
CAA
[ENA]
¡û
>W1910563642
JALY01000091
Thermotogota
Petrotoga halophila DSM 16923 [JALY]
6878
6789
-
Leu
CAA
[ENA]
¡û
>W1910568802
JGVM01000019
Thermotogota
Petrotoga sp. HKA.pet.4.5 [JGVM]
51773
51684
-
Leu
CAA
[ENA]
¡û
>W1910568873
JGVT01000007
Thermotogota
Petrotoga sp. Shatin.DS.tank11.9.2.9.3 [JGVT]
50093
50004
-
Leu
CAA
[ENA]
¡û
>C151104226
LN824141
Thermotogota
Defluviitoga tunisiensis [LN824141]
658350
658261
-
Leu
CAA
[Ensembl]
¡û
>W1610606953
LFTL01000018
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
14260
14171
-
Leu
CAA
[ENA]
¡û
>W1610614060
LGGR01000065
Thermotogota
Petrotoga mobilis [LGGR]
5453
5542
+
Leu
CAA
[ENA]
¡û
>W1710728240
LFTL01000018
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
14260
14171
-
Leu
CAA
[ENA]
¡û
>W1710735143
LGGR01000065
Thermotogota
Petrotoga mobilis [LGGR]
5453
5542
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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