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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242445 (9 seq.)
>C171036936
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
127458
127384
-
Asp
GTC
-
¡û
>C171118669
CP021417
Actinomycetota
Corynebacterium silvaticum PO100/5 [CP021417]
2055978
2055902
-
Asp
GTC
-
¡û
>WENV180391163
OBPM01025106
[OBPM] marine metagenome; ENVO:00002010
367
293
-
Asp
GTC
[ENA]
¢þ
>WENV181384076
OFRH01014710
[OFRH] wastewater metagenome; Exp Tend NO 100WW
282
208
-
Asp
GTC
[ENA]
¢þ
>WENV181855967
OGWM01008651
[OGWM] freshwater metagenome; freshwater
65
139
+
Asp
GTC
[ENA]
¢þ
>C191178333
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
1279140
1279214
+
Asp
GTC
-
¡û
>C191178372
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
1259344
1259418
+
Asp
GTC
-
¡û
>C191178411
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
1233357
1233431
+
Asp
GTC
-
¡û
>WENV057921
AACY023311272
Marine microbial communities from Global Ocean Sampling (GOS)
399
323
-
Asp
GTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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