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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242462 (30 seq.)
>W1710792965
LJOV01000284
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
5819
5747
-
Ala
GGC
[ENA]
¡û
>W1710793062
LJOX01000019
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
38672
38600
-
Ala
GGC
[ENA]
¡û
>W1711081293
LSSA01000408
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
8413
8485
+
Ala
GGC
[ENA]
¡û
>W131110105
APIY01000210
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
11721
11649
-
Ala
GGC
[ENA]
¡û
>W1711584886
MNZA01000087
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_44_21 [MNZA]
10140
10215
+
Ala
GGC
[ENA]
¡û
>WENV180014521
FQKF010032639
[FQKF] soil metagenome; Soil
1807
1879
+
Ala
GGC
[ENA]
¢þ
>W141038205
ALVK01000008
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
17172
17097
-
Ala
GGC
[ENA]
¡û
>W141038652
ALWB01000004
Cyanobacteriota
Pseudanabaena biceps PCC 7429 [ALWB]
39368
39296
-
Ala
GGC
[ENA]
¡û
>WENV181843325
OGVU01008789
[OGVU] freshwater metagenome; freshwater
206
278
+
Ala
GGC
[ENA]
¢þ
>C08006931
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
5482043
5481971
-
Ala
GGC
[Ensembl]
¡û
>WENV170989524
MWVZ01044232
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
339
411
+
Ala
GGC
[ENA]
¢þ
>WENV170996085
MWWF01139386
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
353
425
+
Ala
GGC
[ENA]
¢þ
>WENV171003095
NNBT01000745
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
696
770
+
Ala
GGC
[ENA]
¢þ
>C181137708
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
848768
848840
+
Ala
GGC
-
¡û
>W141701070
JMKF01000005
Cyanobacteriota
[Leptolyngbya] sp. JSC-1 JSC-1 [JMKF]
45053
45125
+
Ala
GGC
[ENA]
¡û
>W1910175571
BJCF01000084
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
2939
3011
+
Ala
GGC
[ENA]
¡û
>W1910872429
NDHW01000111
Cyanobacteriota
Pseudanabaena sp. SR411 [NDHW]
36909
36983
+
Ala
GGC
[ENA]
¡û
>W1911118702
NOLI01000193
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
10940
11012
+
Ala
GGC
[ENA]
¡û
>CHL090100883
AP006715
Rhodophyta
Porphyra yezoensis
117415
117343
-
Ala
GGC
[ENA]
¡û
>W1810053442
PDDM01000004
Cyanobacteriota
Pseudanabaena sp. BC1403 [PDDM]
239478
239552
+
Ala
GGC
[ENA]
¡û
>W1810366396
PVWK01000043
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
37155
37083
-
Ala
GGC
[ENA]
¡û
>C151004183
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
3037538
3037466
-
Ala
GGC
[Ensembl]
¡û
>C161002793
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
3807448
3807376
-
Ala
GGC
[Ensembl]
¡û
>W1610084856
CDHJ01000088
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
44392
44464
+
Ala
GGC
[ENA]
¡û
>C131004932
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
5083022
5082950
-
Ala
GGC
[Ensembl]
¡û
>W1610634148
LIRE01000459
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
15427
15355
-
Ala
GGC
[ENA]
¡û
>W1610656969
LJOV01000284
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
5819
5747
-
Ala
GGC
[ENA]
¡û
>W1610657066
LJOX01000019
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
38672
38600
-
Ala
GGC
[ENA]
¡û
>W1710089718
CDHJ01000088
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
44392
44464
+
Ala
GGC
[ENA]
¡û
>W1710768525
LIRE01000459
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
15427
15355
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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