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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242570 (49 seq.)
>W1710857612
LMAK01000013
Bacteroidota
Formosa algae [LMAK]
59439
59362
-
Val
TAC
[ENA]
¡û
>W1710857613
LMAK01000013
Bacteroidota
Formosa algae [LMAK]
59284
59207
-
Val
TAC
[ENA]
¡û
>w012566
AAMP01000001
Bacteroidota
Croceibacter atlanticus HTCC2559 [AAMP]
1487074
1487151
+
Val
TAC
[ENA]
¡û
>WENV180214501
OBAP01004899
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
83
160
+
Val
TAC
[ENA]
¢þ
>WENV180383096
OBOU01000663
[OBOU] marine metagenome; ENV:00002010
3049
3126
+
Val
TAC
[ENA]
¢þ
>WENV180383660
OBOV01004872
[OBOV] marine metagenome; ENV:00002010
1007
930
-
Val
TAC
[ENA]
¢þ
>WENV180395653
OBPT01065120
[OBPT] marine metagenome; ENVO:00002010 seawater
290
213
-
Val
TAC
[ENA]
¢þ
>WENV181322405
OFKR01003181
[OFKR] marine metagenome; sea ice
959
884
-
Val
TAC
[ENA]
¢þ
>WENV181325647
OFLJ01010802
[OFLJ] seawater metagenome; seawater
246
323
+
Val
TAC
[ENA]
¢þ
>WENV182546701
OJBP01001297
[OJBP] seawater metagenome; Sea water
8247
8322
+
Val
TAC
[ENA]
¢þ
>WENV182557865
OJDL01000234
[OJDL] seawater metagenome; Sea water
19859
19934
+
Val
TAC
[ENA]
¢þ
>WENV182565153
OJEH01000008
[OJEH] seawater metagenome; Sea water
18129
18204
+
Val
TAC
[ENA]
¢þ
>WENV182569883
OJFB01001303
[OJFB] seawater metagenome; Sea water
1807
1730
-
Val
TAC
[ENA]
¢þ
>WENV182572275
OJFL01002206
[OJFL] seawater metagenome; Sea water
4374
4299
-
Val
TAC
[ENA]
¢þ
>WENV182579259
OJGS01003400
[OJGS] seawater metagenome; Sea water
802
877
+
Val
TAC
[ENA]
¢þ
>WENV182585718
OJHI01001868
[OJHI] seawater metagenome; Sea water
2706
2631
-
Val
TAC
[ENA]
¢þ
>WENV183617310
OOEE01166054
[OOEE] marine metagenome; sea ice
320
395
+
Val
TAC
[ENA]
¢þ
>WENV183617612
OOEG01016926
[OOEG] marine metagenome; sea ice
352
277
-
Val
TAC
[ENA]
¢þ
>WENV183619504
OOFQ01010878
[OOFQ] marine metagenome; seawater
246
323
+
Val
TAC
[ENA]
¢þ
>WENV183625616
OOGG01003925
[OOGG] marine metagenome; sea ice
134
59
-
Val
TAC
[ENA]
¢þ
>WENV183627785
OOGL01046002
[OOGL] marine metagenome; sea ice
534
459
-
Val
TAC
[ENA]
¢þ
>WENV170274362
CERM01012379
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2560
2637
+
Val
TAC
[ENA]
¢þ
>WENV170306714
CESJ01061730
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1507
1584
+
Val
TAC
[ENA]
¢þ
>WENV170551073
CXWF01095879
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1484
1409
-
Val
TAC
[ENA]
¢þ
>WENV170569790
FLMP01304644
[FLMP] seawater metagenome; seawater
82
5
-
Val
TAC
[ENA]
¢þ
>WENV170623551
FUWD013156931
[FUWD] metagenome; unknown
76
1
-
Val
TAC
[ENA]
¢þ
>WENV170631826
FUWD013366721
[FUWD] metagenome; unknown
76
1
-
Val
TAC
[ENA]
¢þ
>WENV170646655
JQIA01000940
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
5307
5230
-
Val
TAC
[ENA]
¢þ
>WENV170783565
MAAC01017881
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3206
3129
-
Val
TAC
[ENA]
¢þ
>WENV170815938
MDSX01020043
[MDSX] marine metagenome; seawater
1547
1624
+
Val
TAC
[ENA]
¢þ
>WENV170919371
MDTF01008446
[MDTF] marine metagenome; seawater
11441
11364
-
Val
TAC
[ENA]
¢þ
>WENV171002688
NHNJ01135430
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
6
83
+
Val
TAC
[ENA]
¢þ
>C181113285
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
1512139
1512214
+
Val
TAC
-
¡û
>C181175182
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
2020573
2020648
+
Val
TAC
-
¡û
>C181175183
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
2020685
2020760
+
Val
TAC
-
¡û
>W141563334
JHZX01000001
Bacteroidota
Sediminibacter sp. Hel_I_10 [JHZX]
1350621
1350544
-
Val
TAC
[ENA]
¡û
>W1910758263
MLJY01000015
Bacteroidota
Formosa algae KMM 8021 [MLJY]
17240
17315
+
Val
TAC
[ENA]
¡û
>W1910758264
MLJY01000015
Bacteroidota
Formosa algae KMM 8021 [MLJY]
17395
17470
+
Val
TAC
[ENA]
¡û
>C10102654
CP002046
Bacteroidota
Croceibacter atlanticus HTCC2559 [CP002046]
1486380
1486455
+
Val
TAC
[Ensembl]
¡û
>C11111629
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
682127
682050
-
Val
TAC
[Ensembl]
¡û
>C161105083
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
3333375
3333298
-
Val
TAC
[Ensembl]
¡û
>C161105084
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
3333232
3333155
-
Val
TAC
[Ensembl]
¡û
>W1610082029
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
3530505
3530582
+
Val
TAC
[ENA]
¡û
>W1610082030
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
3530666
3530743
+
Val
TAC
[ENA]
¡û
>W1610719993
LMAK01000013
Bacteroidota
Formosa algae [LMAK]
59439
59362
-
Val
TAC
[ENA]
¡û
>W1610719994
LMAK01000013
Bacteroidota
Formosa algae [LMAK]
59284
59207
-
Val
TAC
[ENA]
¡û
>W1710080802
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
3530505
3530582
+
Val
TAC
[ENA]
¡û
>W1710080803
BDEL01000001
Bacteroidota
Formosa haliotis [BDEL]
3530666
3530743
+
Val
TAC
[ENA]
¡û
>W1710582211
FPKV01000001
Bacteroidota
Flaviramulus basaltis [FPKV]
178451
178374
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK