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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242696 (43 seq.)
>W131108963
APGP01000101
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
37672
37747
+
Arg
TCG
[ENA]
¡û
>W131218291
ATXO01000003
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
186853
186928
+
Arg
TCG
[ENA]
¡û
>C006929
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1143797
1143722
-
Arg
TCG
[Ensembl]
¡û
>WENV181226052
OFDK01000010
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
56187
56262
+
Arg
TCG
[ENA]
¢þ
>WENV181226070
OFDK01000013
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
107345
107420
+
Arg
TCG
[ENA]
¢þ
>WENV181285412
OFGS01000217
[OFGS] hot springs metagenome; Water and soil
4464
4389
-
Arg
TCG
[ENA]
¢þ
>WENV181408774
OGCH01013191
[OGCH] hot springs metagenome; hot springs
910
985
+
Arg
TCG
[ENA]
¢þ
>WENV181411190
OGCI01015863
[OGCI] hot springs metagenome; Hot spring water
686
611
-
Arg
TCG
[ENA]
¢þ
>C191131113
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1995197
1995272
+
Arg
TCG
-
¡û
>W09104565
AALW01000115
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
3125
3050
-
Arg
TCG
[ENA]
¡û
>W09113837
ABYZ01000018
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
46596
46521
-
Arg
TCG
[ENA]
¡û
>C09100831
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2039897
2039972
+
Arg
TCG
[Ensembl]
¡û
>W1911155334
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2191487
2191562
+
Arg
TCG
[ENA]
¡û
>W1911244041
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2277891
2277816
-
Arg
TCG
[ENA]
¡û
>W1911244072
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1746189
1746264
+
Arg
TCG
[ENA]
¡û
>W1911244122
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2299156
2299231
+
Arg
TCG
[ENA]
¡û
>W1911244199
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
830517
830442
-
Arg
TCG
[ENA]
¡û
>W1911244219
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2209270
2209345
+
Arg
TCG
[ENA]
¡û
>W1911572562
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
741181
741106
-
Arg
TCG
[ENA]
¡û
>W1911572657
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
825392
825317
-
Arg
TCG
[ENA]
¡û
>W1810052276
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
297531
297456
-
Arg
TCG
[ENA]
¡û
>W1810071915
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
779514
779439
-
Arg
TCG
[ENA]
¡û
>W1810071952
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1813616
1813541
-
Arg
TCG
[ENA]
¡û
>W1810071987
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2932134
2932209
+
Arg
TCG
[ENA]
¡û
>W1810368007
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2795184
2795259
+
Arg
TCG
[ENA]
¡û
>C10103647
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1872400
1872475
+
Arg
TCG
[Ensembl]
¡û
>C11105230
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
892689
892614
-
Arg
TCG
[Ensembl]
¡û
>C11105409
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
837576
837501
-
Arg
TCG
[Ensembl]
¡û
>C11105455
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
932286
932211
-
Arg
TCG
[Ensembl]
¡û
>C11105469
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1637934
1638009
+
Arg
TCG
[Ensembl]
¡û
>C11105853
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1718476
1718551
+
Arg
TCG
[Ensembl]
¡û
>W11139392
AEKB01000016
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
55372
55447
+
Arg
TCG
[ENA]
¡û
>W11139460
AEKD01000007
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
51925
51850
-
Arg
TCG
[ENA]
¡û
>W1511563951
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
2211299
2211374
+
Arg
TCG
[ENA]
¡û
>W1511563988
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
793539
793614
+
Arg
TCG
[ENA]
¡û
>W1511564067
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
973431
973356
-
Arg
TCG
[ENA]
¡û
>W1710603763
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1263834
1263759
-
Arg
TCG
[ENA]
¡û
>W1710603805
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1193447
1193522
+
Arg
TCG
[ENA]
¡û
>W1710603902
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2146755
2146830
+
Arg
TCG
[ENA]
¡û
>W1710605063
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1205403
1205478
+
Arg
TCG
[ENA]
¡û
>W1710609685
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1182477
1182402
-
Arg
TCG
[ENA]
¡û
>W1710609714
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
2719602
2719677
+
Arg
TCG
[ENA]
¡û
>W1710609799
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2304378
2304453
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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