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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242702 (21 seq.)
>WENV181408880
OGCH01019516
[OGCH] hot springs metagenome; hot springs
282
357
+
Gln
TTG
[ENA]
¢þ
>C08010989
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
548049
548124
+
Gln
TTG
[Ensembl]
¡û
>WENV170675708
LDZQ01000369
[LDZQ] terrestrial metagenome; oil reservoir sample I2
80082
80157
+
Gln
TTG
[ENA]
¢þ
>WENV170676065
LDZR01000687
[LDZR] terrestrial metagenome; oil reservoir sample K2
10229
10304
+
Gln
TTG
[ENA]
¢þ
>WENV170676437
LDZR01002680
[LDZR] terrestrial metagenome; oil reservoir sample K2
40328
40403
+
Gln
TTG
[ENA]
¢þ
>WENV170676954
LDZS01003377
[LDZS] terrestrial metagenome; oil reservoir sample K3
466
541
+
Gln
TTG
[ENA]
¢þ
>W141561643
JHYP01000004
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
588824
588749
-
Gln
TTG
[ENA]
¡û
>W09113928
ABZD01000007
Thermotogota
Kosmotoga olearia TBF 19.5.1 [ABZD]
78847
78922
+
Gln
TTG
[ENA]
¡û
>W141778838
JONI01000004
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
316863
316788
-
Gln
TTG
[ENA]
¡û
>C09106825
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
402544
402469
-
Gln
TTG
[Ensembl]
¡û
>C141000325
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
541211
541286
+
Gln
TTG
-
¡û
>C141000380
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
1833221
1833296
+
Gln
TTG
-
¡û
>C161005119
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
35148
35073
-
Gln
TTG
[Ensembl]
¡û
>W1610520942
JGCK01000014
Thermotogota
Kosmotoga sp. DU53 [JGCK]
61256
61181
-
Gln
TTG
[ENA]
¡û
>W1610612510
LGEV01000002
Thermotogota
Thermotoga sp. 50_64 [LGEV]
80082
80157
+
Gln
TTG
[ENA]
¡û
>W1610612885
LGFF01000066
Thermotogota
Pseudothermotoga lettingae [LGFF]
10229
10304
+
Gln
TTG
[ENA]
¡û
>W1610612942
LGFH01000004
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
40328
40403
+
Gln
TTG
[ENA]
¡û
>W1710617192
JGCK01000014
Thermotogota
Kosmotoga sp. DU53 [JGCK]
61256
61181
-
Gln
TTG
[ENA]
¡û
>W1710733908
LGEV01000002
Thermotogota
Thermotoga sp. 50_64 [LGEV]
80082
80157
+
Gln
TTG
[ENA]
¡û
>W1710734167
LGFF01000066
Thermotogota
Pseudothermotoga lettingae [LGFF]
10229
10304
+
Gln
TTG
[ENA]
¡û
>W1710734224
LGFH01000004
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
40328
40403
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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