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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242716 (58 seq.)
>W1711283063
LZOF01000025
Spirochaetota
Brachyspira hampsonii [LZOF]
153896
153823
-
Phe
GAA
[ENA]
¡û
>W1711283113
LZOG01000172
Spirochaetota
Brachyspira hampsonii [LZOG]
8118
8191
+
Phe
GAA
[ENA]
¡û
>W1711307493
MAOX01000030
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
18721
18648
-
Phe
GAA
[ENA]
¡û
>W1711307515
MAOY01000007
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
132805
132732
-
Phe
GAA
[ENA]
¡û
>W1711351544
MDCO01000001
Spirochaetota
Brachyspira hampsonii [MDCO]
544536
544609
+
Phe
GAA
[ENA]
¡û
>W131184514
ARSY01000048
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
92099
92026
-
Phe
GAA
[ENA]
¡û
>W131093661
AOMM01000480
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
4548
4621
+
Phe
GAA
[ENA]
¡û
>W1711507058
MKXF01000036
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
17119
17192
+
Phe
GAA
[ENA]
¡û
>W131182404
ARQI01000129
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
96840
96767
-
Phe
GAA
[ENA]
¡û
>WENV180116957
OARB01000527
[OARB] human gut metagenome; ENVO:feces
960
1033
+
Phe
GAA
[ENA]
¢þ
>WENV180117711
OARM01000014
[OARM] human gut metagenome; ENVO:feces
35049
35122
+
Phe
GAA
[ENA]
¢þ
>W141037638
ALNZ01000027
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
27228
27301
+
Phe
GAA
[ENA]
¡û
>WENV181666159
OGOJ01020616
[OGOJ] human gut metagenome; faeces
813
741
-
Phe
GAA
[ENA]
¢þ
>WENV181705212
OGPK01003904
[OGPK] human gut metagenome; faeces
6830
6758
-
Phe
GAA
[ENA]
¢þ
>W141275711
JADF01000002
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
45603
45676
+
Phe
GAA
[ENA]
¡û
>WENV182964757
OKWR01007833
[OKWR] human gut metagenome; human gut
2533
2461
-
Phe
GAA
[ENA]
¢þ
>WENV183384793
OLYN01014115
[OLYN] human gut metagenome; feces
1074
1146
+
Phe
GAA
[ENA]
¢þ
>WENV183423626
OMBG01004154
[OMBG] human gut metagenome; feces
943
1015
+
Phe
GAA
[ENA]
¢þ
>WENV183447619
OMCS01019132
[OMCS] human gut metagenome; feces
152
224
+
Phe
GAA
[ENA]
¢þ
>WENV183642629
OQVN01014156
[OQVN] human gut metagenome; human gut
734
662
-
Phe
GAA
[ENA]
¢þ
>WENV183648895
OQVS01054433
[OQVS] human gut metagenome; human gut
112
40
-
Phe
GAA
[ENA]
¢þ
>WENV183652350
OQVU01033402
[OQVU] human gut metagenome; human gut
839
911
+
Phe
GAA
[ENA]
¢þ
>WENV183653416
OQVZ01022809
[OQVZ] human gut metagenome; human gut
747
675
-
Phe
GAA
[ENA]
¢þ
>C181038081
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
874731
874658
-
Phe
GAA
-
¡û
>C191017005
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
683809
683736
-
Phe
GAA
-
¡û
>W09108407
ABTG01000001
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
370703
370776
+
Phe
GAA
[ENA]
¡û
>W1910000017
AFQM01000034
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
197
270
+
Phe
GAA
[ENA]
¡û
>W1910569140
JJMJ01000099
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
40409
40482
+
Phe
GAA
[ENA]
¡û
>W1910569198
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
1134588
1134661
+
Phe
GAA
[ENA]
¡û
>W1910574900
JQIU01000009
Spirochaetota
Brachyspira sp. G79 [JQIU]
176336
176409
+
Phe
GAA
[ENA]
¡û
>C09102349
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1116471
1116398
-
Phe
GAA
[Ensembl]
¡û
>C10101952
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
2951380
2951453
+
Phe
GAA
[Ensembl]
¡û
>C10101983
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
2395724
2395651
-
Phe
GAA
[Ensembl]
¡û
>C11103106
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
1016980
1017053
+
Phe
GAA
[Ensembl]
¡û
>W1510641502
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
1943201
1943128
-
Phe
GAA
[ENA]
¡û
>W1511506952
JXNA01000073
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
94479
94406
-
Phe
GAA
[ENA]
¡û
>W1511506965
JXNB01000022
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
133307
133234
-
Phe
GAA
[ENA]
¡û
>W1511507001
JXNC01000016
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
93009
92936
-
Phe
GAA
[ENA]
¡û
>W1511507040
JXND01000030
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
94917
94844
-
Phe
GAA
[ENA]
¡û
>W1511507068
JXNE01000048
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
31298
31371
+
Phe
GAA
[ENA]
¡û
>W1511507096
JXNF01000025
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
92359
92286
-
Phe
GAA
[ENA]
¡û
>W1511507143
JXNG01000053
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
31603
31676
+
Phe
GAA
[ENA]
¡û
>W1511507158
JXNH01000025
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
91734
91661
-
Phe
GAA
[ENA]
¡û
>W1511507197
JXNI01000054
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
43348
43421
+
Phe
GAA
[ENA]
¡û
>W1511507231
JXNJ01000024
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
194738
194811
+
Phe
GAA
[ENA]
¡û
>W1511507256
JXNK01000025
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
6601
6674
+
Phe
GAA
[ENA]
¡û
>W1511507299
JXNL01000129
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
30396
30469
+
Phe
GAA
[ENA]
¡û
>W1511507336
JXNM01000104
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
50060
49987
-
Phe
GAA
[ENA]
¡û
>W1511507349
JXNN01000019
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
89490
89417
-
Phe
GAA
[ENA]
¡û
>W1511507375
JXNO01000014
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
119994
120067
+
Phe
GAA
[ENA]
¡û
>W1511507410
JXNP01000015
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
91951
91878
-
Phe
GAA
[ENA]
¡û
>W1511507439
JXNQ01000003
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
6683
6756
+
Phe
GAA
[ENA]
¡û
>W1511507497
JXNR01000076
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
93504
93431
-
Phe
GAA
[ENA]
¡û
>W1511507512
JXNS01000047
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
81740
81813
+
Phe
GAA
[ENA]
¡û
>C161092126
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
2607342
2607415
+
Phe
GAA
[Ensembl]
¡û
>C131001479
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
882903
882976
+
Phe
GAA
[Ensembl]
¡û
>C131003832
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
1117585
1117512
-
Phe
GAA
[Ensembl]
¡û
>C131019653
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
1783616
1783689
+
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK