This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242720 (63 seq.)
>W1710797550
LJTB01000002
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
244832
244756
-
Val
GAC
[ENA]
¡û
>W1711050885
LRRU01000020
Gammaproteobacteria
Pseudoalteromonas gelatinilytica [LRRU]
279185
279109
-
Val
GAC
[ENA]
¡û
>W1711338304
MBSZ01000008
Gammaproteobacteria
Pseudoalteromonas lipolytica [MBSZ]
20547
20623
+
Val
GAC
[ENA]
¡û
>W1711795673
MWPV01000005
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
256766
256842
+
Val
GAC
[ENA]
¡û
>W131095713
AOPM01000022
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
41743
41819
+
Val
GAC
[ENA]
¡û
>W131095714
AOPM01000022
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
41849
41925
+
Val
GAC
[ENA]
¡û
>W131180236
ARMY01000060
Gammaproteobacteria
Pseudoalteromonas piscicida ATCC 15057 [ARMY]
75702
75778
+
Val
GAC
[ENA]
¡û
>W131244305
CAPN01000051
Gammaproteobacteria
Pseudoalteromonas luteoviolacea B = ATCC 29581 [CAPN]
465043
464967
-
Val
GAC
[ENA]
¡û
>W131244306
CAPN01000051
Gammaproteobacteria
Pseudoalteromonas luteoviolacea B = ATCC 29581 [CAPN]
464798
464722
-
Val
GAC
[ENA]
¡û
>C171038727
CP015415
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [CP015415, CP015416]
2271299
2271223
-
Val
GAC
-
¡û
>C171038729
CP015415
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [CP015415, CP015416]
2271083
2271007
-
Val
GAC
-
¡û
>w014211
AAOH01000004
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
139910
139988
+
Val
GAC
[ENA]
¡û
>W141402168
JDVB01000004
Gammaproteobacteria
Pseudoalteromonas lipolytica SCSIO 04301 [JDVB]
323095
323019
-
Val
GAC
[ENA]
¡û
>WENV170336394
CETA01007890
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
93
169
+
Val
GAC
[ENA]
¢þ
>C181010449
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
2038306
2038382
+
Val
GAC
-
¡û
>C181067366
CP022522
Gammaproteobacteria
Pseudoalteromonas sp. NC201 [CP022522]
1863151
1863075
-
Val
GAC
-
¡û
>C191079866
CP031759
Gammaproteobacteria
Pseudoalteromonas piscicida DE1-A [CP031759, CP031760]
1797461
1797385
-
Val
GAC
-
¡û
>C191083326
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
1340603
1340679
+
Val
GAC
-
¡û
>W1910911205
NHNM01000007
Gammaproteobacteria
Pseudoalteromonas sp. GCY [NHNM]
109944
110020
+
Val
GAC
[ENA]
¡û
>W1911239178
NSDG01000025
Gammaproteobacteria
Pseudoalteromonas sp. HM-SA03 [NSDG]
11521
11597
+
Val
GAC
[ENA]
¡û
>W1911698429
QNQN01000073
Gammaproteobacteria
Pseudoalteromonas sp. A757 [QNQN]
312722
312798
+
Val
GAC
[ENA]
¡û
>W1911798897
QYSE01000001
Gammaproteobacteria
Pseudoalteromonas profundi MNAD 1.6 [QYSE]
245297
245221
-
Val
GAC
[ENA]
¡û
>W1810248784
PQBV01000023
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
467
391
-
Val
GAC
[ENA]
¡û
>W1810248881
PQBW01000006
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
45918
45842
-
Val
GAC
[ENA]
¡û
>W1810248994
PQBX01000039
Gammaproteobacteria
Pseudoalteromonas sp. T1lg21 [PQBX]
134574
134650
+
Val
GAC
[ENA]
¡û
>W1810249790
PQCF01000032
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
459113
459037
-
Val
GAC
[ENA]
¡û
>SRA1005010
SRR006906.221565
metagenomic water samples (SRP000427)
20
96
+
Val
GAC
[SRA]
>W1511502049
JXCJ01000001
Gammaproteobacteria
Gilvimarinus agarilyticus JEA5 [JXCJ]
2633663
2633587
-
Val
GAC
[ENA]
¡û
>W1511518126
JXXW01000068
Gammaproteobacteria
Pseudoalteromonas piscicida S2040 [JXXW]
9120
9196
+
Val
GAC
[ENA]
¡û
>W1511518171
JXXX01000049
Gammaproteobacteria
Pseudoalteromonas piscicida S2724 [JXXX]
42630
42554
-
Val
GAC
[ENA]
¡û
>W1511518288
JXXZ01000003
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
12944
13020
+
Val
GAC
[ENA]
¡û
>W1511518289
JXXZ01000003
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
13050
13126
+
Val
GAC
[ENA]
¡û
>W1511681134
LFIJ01000001
Gammaproteobacteria
Gilvimarinus polysaccharolyticus YN3 [LFIJ]
985874
985950
+
Val
GAC
[ENA]
¡û
>W121025020
AHCA01000008
Gammaproteobacteria
Pseudoalteromonas haloplanktis ATCC 14393 [AHCA]
97617
97541
-
Val
GAC
[ENA]
¡û
>W121025181
AHCC01000006
Gammaproteobacteria
Pseudoalteromonas piscicida JCM 20779 [AHCC] JCM 20779 [AHCC]
75350
75426
+
Val
GAC
[ENA]
¡û
>W121064717
AJMP01000001
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
129161
129085
-
Val
GAC
[ENA]
¡û
>W121102516
AKXJ01000012
Gammaproteobacteria
Pseudoalteromonas sp. NJ631 [AKXJ]
82746
82670
-
Val
GAC
[ENA]
¡û
>W1610025226
AUXU01000129
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
89322
89398
+
Val
GAC
[ENA]
¡û
>W1610025228
AUXU01000129
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
89538
89614
+
Val
GAC
[ENA]
¡û
>W1610025588
AUXY01000103
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33-S [AUXY]
13723
13647
-
Val
GAC
[ENA]
¡û
>W1610025590
AUXY01000103
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33-S [AUXY]
13505
13429
-
Val
GAC
[ENA]
¡û
>W1610025633
AUXZ01000066
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33 [AUXZ]
13791
13715
-
Val
GAC
[ENA]
¡û
>W1610025635
AUXZ01000066
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33 [AUXZ]
13573
13497
-
Val
GAC
[ENA]
¡û
>W1610025713
AUYA01000080
Gammaproteobacteria
Pseudoalteromonas luteoviolacea CPMOR-2 [AUYA]
58100
58176
+
Val
GAC
[ENA]
¡û
>W1610025815
AUYB01000098
Gammaproteobacteria
Pseudoalteromonas luteoviolacea DSM 6061 [AUYB]
21616
21540
-
Val
GAC
[ENA]
¡û
>W1610081703
BDDT01000006
Gammaproteobacteria
Pseudoalteromonas prydzensis [BDDT]
169560
169636
+
Val
GAC
[ENA]
¡û
>W1610527203
JPWZ01000047
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [JPWZ]
9478
9554
+
Val
GAC
[ENA]
¡û
>W1610620826
LHPH01000005
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
132056
131980
-
Val
GAC
[ENA]
¡û
>W1610635560
LITL01000003
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
132229
132153
-
Val
GAC
[ENA]
¡û
>W1610661507
LJTB01000002
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
244832
244756
-
Val
GAC
[ENA]
¡û
>W1610892014
LRRU01000020
Gammaproteobacteria
Pseudoalteromonas gelatinilytica [LRRU]
279185
279109
-
Val
GAC
[ENA]
¡û
>W1710021468
AUXU01000129
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
89322
89398
+
Val
GAC
[ENA]
¡û
>W1710021470
AUXU01000129
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
89538
89614
+
Val
GAC
[ENA]
¡û
>W1710021830
AUXY01000103
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33-S [AUXY]
13723
13647
-
Val
GAC
[ENA]
¡û
>W1710021832
AUXY01000103
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33-S [AUXY]
13505
13429
-
Val
GAC
[ENA]
¡û
>W1710021875
AUXZ01000066
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33 [AUXZ]
13791
13715
-
Val
GAC
[ENA]
¡û
>W1710021877
AUXZ01000066
Gammaproteobacteria
Pseudoalteromonas luteoviolacea H33 [AUXZ]
13573
13497
-
Val
GAC
[ENA]
¡û
>W1710021953
AUYB01000098
Gammaproteobacteria
Pseudoalteromonas luteoviolacea DSM 6061 [AUYB]
21616
21540
-
Val
GAC
[ENA]
¡û
>W1710080418
BDDT01000006
Gammaproteobacteria
Pseudoalteromonas prydzensis [BDDT]
169560
169636
+
Val
GAC
[ENA]
¡û
>W1710577673
FPAZ01000012
Gammaproteobacteria
Pseudoalteromonas lipolytica [FPAZ]
10020
10096
+
Val
GAC
[ENA]
¡û
>W1710628706
JPWZ01000047
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [JPWZ]
9478
9554
+
Val
GAC
[ENA]
¡û
>W1710748693
LHPH01000005
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
132056
131980
-
Val
GAC
[ENA]
¡û
>W1710770188
LITL01000003
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
132229
132153
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK