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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242773 (42 seq.)
>W131051992
AMYG01000052
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
297
222
-
Pro
TGG
[ENA]
¡û
>W131167544
ARDJ01000005
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
51588
51663
+
Pro
TGG
[ENA]
¡û
>C025823
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
499255
499330
+
Pro
TGG
[Ensembl]
¡û
>WENV181226133
OFDK01000081
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
27992
27917
-
Pro
TGG
[ENA]
¢þ
>W141153108
AXDC01000002
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
153942
153867
-
Pro
TGG
[ENA]
¡û
>C08010932
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
458249
458324
+
Pro
TGG
[Ensembl]
¡û
>C08011063
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1834247
1834175
-
Pro
TGG
[Ensembl]
¡û
>W141276479
JADV01000008
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
61996
61921
-
Pro
TGG
[ENA]
¡û
>WENV170675637
LDZP01000171
[LDZP] terrestrial metagenome; oil reservoir sample I1
58425
58500
+
Pro
TGG
[ENA]
¢þ
>WENV170676260
LDZR01001901
[LDZR] terrestrial metagenome; oil reservoir sample K2
1290
1215
-
Pro
TGG
[ENA]
¢þ
>WENV170676883
LDZS01003001
[LDZS] terrestrial metagenome; oil reservoir sample K3
4098
4023
-
Pro
TGG
[ENA]
¢þ
>C191108098
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1019204
1019279
+
Pro
TGG
-
¡û
>W09112127
ABXP01000025
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
7081
7156
+
Pro
TGG
[ENA]
¡û
>W09133546
ACPF01000041
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
21280
21205
-
Pro
TGG
[ENA]
¡û
>W09134130
ACQZ01000012
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
47713
47788
+
Pro
TGG
[ENA]
¡û
>W09135028
ACVH01000001
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
72678
72603
-
Pro
TGG
[ENA]
¡û
>W09135139
ACVK01000003
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
22630
22705
+
Pro
TGG
[ENA]
¡û
>W09135846
ACXP01000008
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
16885
16810
-
Pro
TGG
[ENA]
¡û
>C151045286
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
466227
466302
+
Pro
TGG
[Ensembl]
¡û
>W10105911
ACXY01000003
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
92337
92262
-
Pro
TGG
[ENA]
¡û
>W10120474
ADXD01000008
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
12257
12182
-
Pro
TGG
[ENA]
¡û
>C10113372
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
507318
507393
+
Pro
TGG
[Ensembl]
¡û
>C10113426
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
584002
584077
+
Pro
TGG
[Ensembl]
¡û
>W11108234
ACXY01000003
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
92337
92262
-
Pro
TGG
[ENA]
¡û
>W1511275113
JOOI01000003
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
121726
121801
+
Pro
TGG
[ENA]
¡û
>C11122490
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1826460
1826385
-
Pro
TGG
[Ensembl]
¡û
>C11122692
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
498104
498179
+
Pro
TGG
[Ensembl]
¡û
>C11123223
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
576869
576944
+
Pro
TGG
[Ensembl]
¡û
>W11127083
ADXD01000008
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
12257
12182
-
Pro
TGG
[ENA]
¡û
>W11152636
AEYS01000003
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
41199
41274
+
Pro
TGG
[ENA]
¡û
>W11152694
AEYS01000251
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
278
353
+
Pro
TGG
[ENA]
¡û
>W1610043642
BAZY01000003
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
98506
98431
-
Pro
TGG
[ENA]
¡û
>W121068073
AJUD01000002
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
25245
25170
-
Pro
TGG
[ENA]
¡û
>W1610612269
LGEO01000008
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
58425
58500
+
Pro
TGG
[ENA]
¡û
>W1610612662
LGEY01000093
Bacillota
Caldanaerobacter subterraneus [LGEY]
1290
1215
-
Pro
TGG
[ENA]
¡û
>W1610613179
LGFN01000105
Bacillota
Caldanaerobacter subterraneus [LGFN]
4098
4023
-
Pro
TGG
[ENA]
¡û
>W1710040802
BAZY01000003
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
98506
98431
-
Pro
TGG
[ENA]
¡û
>W1710515333
FNBS01000061
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
6353
6278
-
Pro
TGG
[ENA]
¡û
>W1710560376
FONI01000022
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
39610
39685
+
Pro
TGG
[ENA]
¡û
>W1710733775
LGEO01000008
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
58425
58500
+
Pro
TGG
[ENA]
¡û
>W1710733983
LGEY01000093
Bacillota
Caldanaerobacter subterraneus [LGEY]
1290
1215
-
Pro
TGG
[ENA]
¡û
>W1710734386
LGFN01000105
Bacillota
Caldanaerobacter subterraneus [LGFN]
4098
4023
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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