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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242775 (73 seq.)
>W131051988
AMYG01000045
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
9605
9530
-
Met
CAT
[ENA]
¡û
>W131052010
AMYG01000069
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
85
160
+
Met
CAT
[ENA]
¡û
>W131167573
ARDJ01000019
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
8118
8043
-
Met
CAT
[ENA]
¡û
>W131167587
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
96361
96286
-
Met
CAT
[ENA]
¡û
>C025845
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
2151617
2151542
-
Met
CAT
[Ensembl]
¡û
>w018996
AATV01000070
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
5425
5502
+
Met
CAT
[ENA]
¡û
>w018970
AATV01000008
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
63115
63038
-
Met
CAT
[ENA]
¡û
>w010167
AAKQ01000001
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
178687
178610
-
Met
CAT
[ENA]
¡û
>W141092592
AVAF01000098
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
17359
17284
-
Met
CAT
[ENA]
¡û
>W141092602
AVAF01000118
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
365
440
+
Met
CAT
[ENA]
¡û
>WENV181226163
OFDK01000126
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
29469
29544
+
Ile2
CAT
[ENA]
¢þ
>WENV181404277
OGBZ01009760
[OGBZ] sediment metagenome; hot spring sediment
134
209
+
Ile2
CAT
[ENA]
¢þ
>W141153149
AXDC01000076
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
416
491
+
Met
CAT
[ENA]
¡û
>C08010953
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
929659
929734
+
Met
CAT
[Ensembl]
¡û
>C08010960
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1353314
1353389
+
Met
CAT
[Ensembl]
¡û
>C08011039
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
444049
444124
+
Met
CAT
[Ensembl]
¡û
>C08011046
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
793497
793572
+
Met
CAT
[Ensembl]
¡û
>W141276455
JADV01000001
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
139439
139514
+
Met
CAT
[ENA]
¡û
>W141276500
JADV01000026
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
423
498
+
Met
CAT
[ENA]
¡û
>WENV170675624
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229395
229320
-
Met
CAT
[ENA]
¢þ
>WENV170675654
LDZP01000184
[LDZP] terrestrial metagenome; oil reservoir sample I1
21256
21331
+
Met
CAT
[ENA]
¢þ
>WENV170676880
LDZS01002906
[LDZS] terrestrial metagenome; oil reservoir sample K3
3996
3921
-
Met
CAT
[ENA]
¢þ
>C191108123
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2740014
2739939
-
Met
CAT
-
¡û
>C191108130
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2232089
2232014
-
Met
CAT
-
¡û
>W09112160
ABXP01000185
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
5127
5202
+
Met
CAT
[ENA]
¡û
>W09133550
ACPF01000043
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
21079
21154
+
Met
CAT
[ENA]
¡û
>W09133560
ACPF01000148
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
89
164
+
Met
CAT
[ENA]
¡û
>W09134106
ACQZ01000001
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
61441
61366
-
Met
CAT
[ENA]
¡û
>W09134154
ACQZ01000051
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
9370
9295
-
Met
CAT
[ENA]
¡û
>W09135070
ACVH01000067
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
121
196
+
Met
CAT
[ENA]
¡û
>W09135078
ACVH01000075
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
4755
4830
+
Met
CAT
[ENA]
¡û
>W09135170
ACVK01000035
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
21898
21823
-
Met
CAT
[ENA]
¡û
>W09135878
ACXP01000031
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
177
252
+
Met
CAT
[ENA]
¡û
>W09135885
ACXP01000032
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
24149
24224
+
Met
CAT
[ENA]
¡û
>C151045317
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1939729
1939654
-
Met
CAT
[Ensembl]
¡û
>C151045324
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1549318
1549243
-
Met
CAT
[Ensembl]
¡û
>W10105917
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
14918
14993
+
Met
CAT
[ENA]
¡û
>W10105955
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
235
310
+
Met
CAT
[ENA]
¡û
>W10120480
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
14961
15036
+
Met
CAT
[ENA]
¡û
>W10120517
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
605
680
+
Met
CAT
[ENA]
¡û
>C10113399
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1987093
1987018
-
Met
CAT
[Ensembl]
¡û
>C10113406
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1558665
1558590
-
Met
CAT
[Ensembl]
¡û
>C10113455
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1919705
1919630
-
Met
CAT
[Ensembl]
¡û
>W11108240
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
14918
14993
+
Met
CAT
[ENA]
¡û
>W11108278
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
235
310
+
Met
CAT
[ENA]
¡û
>W1511275078
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
1473015
1472940
-
Met
CAT
[ENA]
¡û
>W1511275086
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
940976
940901
-
Met
CAT
[ENA]
¡û
>C11122466
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
439465
439540
+
Met
CAT
[Ensembl]
¡û
>C11122473
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
785691
785766
+
Met
CAT
[Ensembl]
¡û
>C11122728
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1984722
1984647
-
Met
CAT
[Ensembl]
¡û
>C11122735
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1561068
1560993
-
Met
CAT
[Ensembl]
¡û
>C11123252
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2270303
2270228
-
Met
CAT
[Ensembl]
¡û
>C11123259
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1680636
1680561
-
Met
CAT
[Ensembl]
¡û
>W11127089
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
14961
15036
+
Met
CAT
[ENA]
¡û
>W11127126
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
605
680
+
Met
CAT
[ENA]
¡û
>W11152655
AEYS01000013
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
40122
40047
-
Met
CAT
[ENA]
¡û
>W11152668
AEYS01000014
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
25467
25392
-
Met
CAT
[ENA]
¡û
>W121068079
AJUD01000005
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
123557
123482
-
Met
CAT
[ENA]
¡û
>W121068101
AJUD01000009
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
59283
59358
+
Met
CAT
[ENA]
¡û
>W1610043684
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
87
162
+
Met
CAT
[ENA]
¡û
>W1610612256
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229395
229320
-
Met
CAT
[ENA]
¡û
>W1610612286
LGEO01000021
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
21256
21331
+
Met
CAT
[ENA]
¡û
>W1610613176
LGFN01000010
Bacillota
Caldanaerobacter subterraneus [LGFN]
3996
3921
-
Met
CAT
[ENA]
¡û
>W1710040844
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
87
162
+
Met
CAT
[ENA]
¡û
>W1710515311
FNBS01000018
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
8098
8023
-
Met
CAT
[ENA]
¡û
>W1710515328
FNBS01000039
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
15060
15135
+
Met
CAT
[ENA]
¡û
>W1710560358
FONI01000007
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
435
510
+
Met
CAT
[ENA]
¡û
>W1710560367
FONI01000019
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
14962
15037
+
Met
CAT
[ENA]
¡û
>W1710583291
FQUR01000009
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
218376
218301
-
Met
CAT
[ENA]
¡û
>W1710583298
FQUR01000010
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
57644
57719
+
Met
CAT
[ENA]
¡û
>W1710733762
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229395
229320
-
Met
CAT
[ENA]
¡û
>W1710733792
LGEO01000021
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
21256
21331
+
Met
CAT
[ENA]
¡û
>W1710734383
LGFN01000010
Bacillota
Caldanaerobacter subterraneus [LGFN]
3996
3921
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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