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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242813 (30 seq.)
>W1710787581
LJJX01000035
Actinomycetota
Frankia sp. CpI1-P [LJJX]
67162
67235
+
Arg
ACG
[ENA]
¡û
>W1711329015
MBLP01000092
Actinomycetota
Frankia sp. CgIS1 [MBLP]
266317
266390
+
Arg
ACG
[ENA]
¡û
>W1711603539
MOMD01000001
Actinomycetota
Frankia sp. CcI156 [MOMD]
285612
285685
+
Arg
ACG
[ENA]
¡û
>W1711689413
MSEA01000337
Actinomycetota
Frankia casuarinae Cg70.9 [MSEA]
609
682
+
Arg
ACG
[ENA]
¡û
>W131217851
ATXE01000001
Actinomycetota
Aestuariimicrobium kwangyangense DSM 21549 [ATXE]
588557
588630
+
Arg
ACG
[ENA]
¡û
>W131230323
AUHN01000004
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
43602
43529
-
Arg
ACG
[ENA]
¡û
>W131230324
AUHN01000004
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
39211
39136
-
Arg
ACG
[ENA]
¡û
>C009582
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
479588
479516
-
Arg
ACG
[Ensembl]
¡û
>WENV181311304
OFJB01000683
[OFJB] sludge metagenome; sludge
260
185
-
Arg
ACG
[ENA]
¢þ
>WENV181843126
OGVU01001011
[OGVU] freshwater metagenome; freshwater
796
722
-
Arg
ACG
[ENA]
¢þ
>W141195276
AYTZ01000001
Actinomycetota
Frankia sp. CcI6 [AYTZ]
285306
285379
+
Arg
ACG
[ENA]
¡û
>W141241407
CAHH01000011
Actinomycetota
Timonella senegalensis JC301 [CAHH]
35482
35409
-
Arg
ACG
[ENA]
¡û
>W141241408
CAHH01000011
Actinomycetota
Timonella senegalensis JC301 [CAHH]
32350
32277
-
Arg
ACG
[ENA]
¡û
>WENV182828344
OKDF01001481
[OKDF] human gut metagenome; human gut
208
281
+
Arg
ACG
[ENA]
¢þ
>WENV183748764
PPFU01077328
[PPFU] hypolithon metagenome; Antarctic Hypolithon
6577
6652
+
Arg
ACG
[ENA]
¢þ
>W141403455
JDWE01000070
Actinomycetota
Frankia sp. BMG5.23 [JDWE]
3955
3882
-
Arg
ACG
[ENA]
¡û
>C181055918
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
775914
775839
-
Arg
ACG
-
¡û
>C181055919
CP022038
Actinomycetota
Jonesia denitrificans FDAARGOS_301 [CP022038]
772552
772477
-
Arg
ACG
-
¡û
>C181212439
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
312794
312869
+
Arg
ACG
-
¡û
>C181212440
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
316156
316231
+
Arg
ACG
-
¡û
>W09104998
AAOL01000002
Actinomycetota
Acidothermus cellulolyticus 11B [AAOL]
571374
571449
+
Arg
ACG
[ENA]
¡û
>W09109188
ABUA01000023
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
3402
3327
-
Arg
ACG
[ENA]
¡û
>W09109962
ABUS01000002
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [ABUS]
628491
628418
-
Arg
ACG
[ENA]
¡û
>W1910546328
FZMO01000052
Actinomycetota
Frankia canadensis ARgP5 [FZMO]
483
410
-
Arg
ACG
[ENA]
¡û
>W1510061622
CCYM01000002
Actinomycetota
Nigerium massiliense SIT7 [CCYM]
980888
980963
+
Arg
ACG
[ENA]
¡û
>C10107896
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
312952
313027
+
Arg
ACG
[Ensembl]
¡û
>C10107897
CP001706
Actinomycetota
Jonesia denitrificans DSM 20603 [CP001706]
316314
316389
+
Arg
ACG
[Ensembl]
¡û
>W121069970
AJWA01000071
Actinomycetota
Frankia sp. QA3 [AJWA]
137012
136939
-
Arg
ACG
[ENA]
¡û
>W121010753
AGJN01000005
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
185865
185938
+
Arg
ACG
[ENA]
¡û
>W1610651436
LJJX01000035
Actinomycetota
Frankia sp. CpI1-P [LJJX]
67162
67235
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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