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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24300 (59 seq.)
>WENV180242868
OBDJ01000466
[OBDJ] human gut metagenome; human gut
21145
21234
+
Ser
GCT
[ENA]
¢þ
>WENV180334370
OBLF01010292
[OBLF] metagenome; feces
2966
3055
+
Ser
GCT
[ENA]
¢þ
>WENV180471769
OBYP01002122
[OBYP] human gut metagenome; faeces
5959
6048
+
Ser
GCT
[ENA]
¢þ
>WENV180607705
OCPU01002458
[OCPU] human gut metagenome; human gut
338
249
-
Ser
GCT
[ENA]
¢þ
>WENV181341860
OFMI01000704
[OFMI] human gut metagenome; human gut
25354
25443
+
Ser
GCT
[ENA]
¢þ
>WENV181357012
OFMU01003440
[OFMU] human gut metagenome; human gut
7614
7703
+
Ser
GCT
[ENA]
¢þ
>WENV181432741
OGDD01034524
[OGDD] metagenome; Human gut stool
230
141
-
Ser
GCT
[ENA]
¢þ
>WENV181454112
OGEC01011808
[OGEC] metagenome; Human gut stool
523
612
+
Ser
GCT
[ENA]
¢þ
>WENV181485912
OGFM01032846
[OGFM] metagenome; Human gut stool
121
32
-
Ser
GCT
[ENA]
¢þ
>WENV181492583
OGFY01025729
[OGFY] metagenome; Human gut stool
860
949
+
Ser
GCT
[ENA]
¢þ
>WENV181634902
OGMW01040177
[OGMW] metagenome; Human gut stool
723
812
+
Ser
GCT
[ENA]
¢þ
>WENV181661265
OGOG01001936
[OGOG] human gut metagenome; faeces
18493
18582
+
Ser
GCT
[ENA]
¢þ
>WENV181668420
OGOL01001513
[OGOL] human gut metagenome; faeces
528
439
-
Ser
GCT
[ENA]
¢þ
>WENV181692835
OGPA01001331
[OGPA] human gut metagenome; faeces
384
295
-
Ser
GCT
[ENA]
¢þ
>WENV181701441
OGPH01001184
[OGPH] human gut metagenome; faeces
335
246
-
Ser
GCT
[ENA]
¢þ
>WENV181729353
OGQB01004094
[OGQB] human gut metagenome; faeces
527
438
-
Ser
GCT
[ENA]
¢þ
>WENV181742007
OGQK01007453
[OGQK] human gut metagenome; faeces
124
35
-
Ser
GCT
[ENA]
¢þ
>WENV181778943
OGRI01001177
[OGRI] human gut metagenome; faeces
339
250
-
Ser
GCT
[ENA]
¢þ
>WENV181786290
OGRN01001385
[OGRN] human gut metagenome; faeces
20850
20939
+
Ser
GCT
[ENA]
¢þ
>WENV181872181
OGWZ01001539
[OGWZ] human gut metagenome; faeces
528
439
-
Ser
GCT
[ENA]
¢þ
>WENV181887131
OGXL01001287
[OGXL] human gut metagenome; faeces
182
93
-
Ser
GCT
[ENA]
¢þ
>WENV181908040
OGYA01008024
[OGYA] human gut metagenome; faeces
3282
3371
+
Ser
GCT
[ENA]
¢þ
>WENV181968215
OGZW01000850
[OGZW] human gut metagenome; faeces
20871
20960
+
Ser
GCT
[ENA]
¢þ
>WENV182107672
OHIK01032453
[OHIK] human gut metagenome; feces
531
620
+
Ser
GCT
[ENA]
¢þ
>WENV182288156
OHVT01001503
[OHVT] human gut metagenome; feces
529
440
-
Ser
GCT
[ENA]
¢þ
>WENV182321075
OHYL01000372
[OHYL] human gut metagenome; feces
21637
21726
+
Ser
GCT
[ENA]
¢þ
>WENV182334958
OHZQ01005602
[OHZQ] human gut metagenome; feces
2008
2097
+
Ser
GCT
[ENA]
¢þ
>WENV182387976
OIEB01000331
[OIEB] human gut metagenome; feces
20862
20951
+
Ser
GCT
[ENA]
¢þ
>WENV182391916
OIEG01000335
[OIEG] human gut metagenome; human gut
335
246
-
Ser
GCT
[ENA]
¢þ
>WENV182649888
OJMG01024251
[OJMG] human gut metagenome; feces
105
16
-
Ser
GCT
[ENA]
¢þ
>WENV182768218
OJRV01006172
[OJRV] human gut metagenome; human gut
1973
1884
-
Ser
GCT
[ENA]
¢þ
>WENV182771871
OJRX01052962
[OJRX] human gut metagenome; human gut
528
439
-
Ser
GCT
[ENA]
¢þ
>WENV182942550
OKVH01001513
[OKVH] human gut metagenome; human gut
10162
10251
+
Ser
GCT
[ENA]
¢þ
>WENV183097197
OLNE01001094
[OLNE] human gut metagenome; faeces
20646
20735
+
Ser
GCT
[ENA]
¢þ
>WENV183102507
OLNI01000858
[OLNI] human gut metagenome; faeces
20868
20957
+
Ser
GCT
[ENA]
¢þ
>WENV183106394
OLNL01005926
[OLNL] human gut metagenome; faeces
5373
5462
+
Ser
GCT
[ENA]
¢þ
>WENV183123656
OLNW01001647
[OLNW] human gut metagenome; faeces
336
247
-
Ser
GCT
[ENA]
¢þ
>WENV183137032
OLOG01000748
[OLOG] human gut metagenome; faeces
25191
25280
+
Ser
GCT
[ENA]
¢þ
>WENV183147551
OLON01000552
[OLON] human gut metagenome; faeces
25181
25270
+
Ser
GCT
[ENA]
¢þ
>WENV183162610
OLOW01000995
[OLOW] human gut metagenome; faeces
19105
19194
+
Ser
GCT
[ENA]
¢þ
>WENV183170706
OLPB01000562
[OLPB] human gut metagenome; faeces
21116
21205
+
Ser
GCT
[ENA]
¢þ
>WENV183188404
OLPP01000661
[OLPP] human gut metagenome; faeces
20853
20942
+
Ser
GCT
[ENA]
¢þ
>WENV183204838
OLPZ01000908
[OLPZ] human gut metagenome; faeces
20853
20942
+
Ser
GCT
[ENA]
¢þ
>WENV183207798
OLQA01053105
[OLQA] human gut metagenome; faeces
195
106
-
Ser
GCT
[ENA]
¢þ
>WENV183217581
OLQI01000794
[OLQI] human gut metagenome; faeces
25192
25281
+
Ser
GCT
[ENA]
¢þ
>WENV183218965
OLQJ01029890
[OLQJ] human gut metagenome; faeces
218
129
-
Ser
GCT
[ENA]
¢þ
>WENV183230319
OLQT01000807
[OLQT] human gut metagenome; faeces
340
251
-
Ser
GCT
[ENA]
¢þ
>WENV183233775
OLQV01003513
[OLQV] human gut metagenome; faeces
335
246
-
Ser
GCT
[ENA]
¢þ
>WENV183239719
OLRA01001562
[OLRA] human gut metagenome; faeces
26187
26276
+
Ser
GCT
[ENA]
¢þ
>WENV183256020
OLRK01004029
[OLRK] human gut metagenome; faeces
6754
6843
+
Ser
GCT
[ENA]
¢þ
>WENV183260581
OLRP01001200
[OLRP] human gut metagenome; faeces
20864
20953
+
Ser
GCT
[ENA]
¢þ
>WENV183263657
OLRR01000907
[OLRR] human gut metagenome; faeces
336
247
-
Ser
GCT
[ENA]
¢þ
>WENV183270148
OLRV01003801
[OLRV] human gut metagenome; faeces
230
141
-
Ser
GCT
[ENA]
¢þ
>WENV183271835
OLRW01000918
[OLRW] human gut metagenome; faeces
20868
20957
+
Ser
GCT
[ENA]
¢þ
>WENV183394644
OLZG01006250
[OLZG] human gut metagenome; feces
280
191
-
Ser
GCT
[ENA]
¢þ
>WENV183443167
OMCM01019147
[OMCM] human gut metagenome; feces
689
778
+
Ser
GCT
[ENA]
¢þ
>WENV183517588
OMNP01004563
[OMNP] human gut metagenome; feces
231
142
-
Ser
GCT
[ENA]
¢þ
>WENV183549548
OOAZ01002624
[OOAZ] human gut metagenome; human gut
8691
8780
+
Ser
GCT
[ENA]
¢þ
>WENV183613382
OODU01003810
[OODU] human gut metagenome; human gut
296
207
-
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK