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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243047 (25 seq.)
>A171000883
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
280371
280296
-
Gly
GCC
-
¡û
>A171001010
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1343135
1343210
+
Gly
GCC
-
¡û
>A171001254
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
839057
839132
+
Gly
GCC
-
¡û
>A171001496
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1047961
1047886
-
Gly
GCC
-
¡û
>A171004504
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
640173
640098
-
Gly
GCC
-
¡û
>WENV180287699
OBIL01000386
[OBIL] metagenome; hydrothermal vent
989
914
-
Gly
GCC
[ENA]
¢þ
>WENV180317147
OBKJ01030243
[OBKJ] metagenome; hydrothermal vent
92
167
+
Gly
GCC
[ENA]
¢þ
>WENV180332489
OBLD01021516
[OBLD] metagenome; water
291
216
-
Gly
GCC
[ENA]
¢þ
>WENV180581691
OCMK01041649
[OCMK] metagenome; diffuse fluid
84
9
-
Gly
GCC
[ENA]
¢þ
>WENV181206287
OFAT01002533
[OFAT] metagenome; hydrothermal vent
245
173
-
Gly
GCC
[ENA]
¢þ
>WENV181206723
OFAW01003028
[OFAW] metagenome; hydrothermal vent
1042
1117
+
Gly
GCC
[ENA]
¢þ
>WENV181207280
OFAY01008943
[OFAY] metagenome; hydrothermal vent
421
496
+
Gly
GCC
[ENA]
¢þ
>WENV181213176
OFBU01017745
[OFBU] metagenome; hydrothermal vent
478
553
+
Gly
GCC
[ENA]
¢þ
>WENV181213431
OFBV01002259
[OFBV] metagenome; hydrothermal vent
332
407
+
Gly
GCC
[ENA]
¢þ
>WENV181214010
OFBW01006563
[OFBW] metagenome; hydrothermal vent
195
270
+
Gly
GCC
[ENA]
¢þ
>WENV181215082
OFBZ01002820
[OFBZ] metagenome; hydrothermal vent
99
174
+
Gly
GCC
[ENA]
¢þ
>WENV181215458
OFCA01000467
[OFCA] metagenome; hydrothermal vent
2487
2412
-
Gly
GCC
[ENA]
¢þ
>WENV181216009
OFCB01001372
[OFCB] metagenome; hydrothermal vent
1791
1866
+
Gly
GCC
[ENA]
¢þ
>At0943
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
1150145
1150220
+
Gly
GCC
[Ensembl]
¡û
>W1610001128
ACQW01000022
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
10935
10860
-
Gly
GCC
[ENA]
¡û
>W1610001152
ACQY01000014
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
4055
3980
-
Gly
GCC
[ENA]
¡û
>W1610001557
ACUW01000002
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
107696
107621
-
Gly
GCC
[ENA]
¡û
>W1610001631
ADCA01000002
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
182675
182600
-
Gly
GCC
[ENA]
¡û
>W1610018093
APMM01000015
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
2303
2378
+
Gly
GCC
[ENA]
¡û
>W1610018630
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
311573
311648
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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