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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243049 (20 seq.)
>A171000865
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
1274367
1274442
+
Val
CAC
-
¡û
>A171001009
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1155493
1155567
+
Val
CAC
-
¡û
>A171001282
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
548659
548586
-
Val
CAC
-
¡û
>A171004507
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
414085
414010
-
Val
CAC
-
¡û
>WENV180275303
OBHT01002373
[OBHT] metagenome; hydrothermal vent
769
694
-
Val
CAC
[ENA]
¢þ
>WENV180287869
OBIL01009086
[OBIL] metagenome; hydrothermal vent
73
148
+
Val
CAC
[ENA]
¢þ
>WENV181207228
OFAY01004885
[OFAY] metagenome; hydrothermal vent
377
449
+
Val
CAC
[ENA]
¢þ
>WENV181207938
OFBA01004057
[OFBA] metagenome; hydrothermal vent
130
205
+
Val
CAC
[ENA]
¢þ
>WENV181208774
OFBC01005131
[OFBC] metagenome; hydrothermal vent
247
174
-
Val
CAC
[ENA]
¢þ
>WENV181213014
OFBU01004469
[OFBU] metagenome; hydrothermal vent
1268
1341
+
Val
CAC
[ENA]
¢þ
>WENV181213716
OFBV01027215
[OFBV] metagenome; hydrothermal vent
251
324
+
Val
CAC
[ENA]
¢þ
>WENV181213947
OFBW01003492
[OFBW] metagenome; hydrothermal vent
541
468
-
Val
CAC
[ENA]
¢þ
>WENV181214587
OFBY01002386
[OFBY] metagenome; hydrothermal vent
894
819
-
Val
CAC
[ENA]
¢þ
>WENV181215234
OFBZ01011470
[OFBZ] metagenome; hydrothermal vent
153
78
-
Val
CAC
[ENA]
¢þ
>WENV181216029
OFCB01001687
[OFCB] metagenome; hydrothermal vent
2328
2253
-
Val
CAC
[ENA]
¢þ
>WENV181223962
OFDD01004941
[OFDD] metagenome; hydrothermal vent
94
19
-
Val
CAC
[ENA]
¢þ
>At0948
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
138419
138344
-
Val
CAC
[Ensembl]
¡û
>W1610001099
ACQW01000001
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
30620
30695
+
Val
CAC
[ENA]
¡û
>W1610001556
ACUW01000002
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
295331
295257
-
Val
CAC
[ENA]
¡û
>W1610001642
ADCA01000005
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
53712
53787
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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