This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243173 (48 seq.)
>W1711713331
MTCZ01000007
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
17660
17737
+
Pro
TGG
[ENA]
¡û
>W1711713381
MTCZ01000346
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
323
400
+
Pro
TGG
[ENA]
¡û
>W131224655
AUCZ01000002
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
29757
29834
+
Pro
TGG
[ENA]
¡û
>W131224678
AUCZ01000006
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
177734
177657
-
Pro
TGG
[ENA]
¡û
>WENV180035796
FTLB01010547
[FTLB] metagenome; soil
7875
7800
-
Pro
TGG
[ENA]
¢þ
>WENV180296813
OBJA01003073
[OBJA] soil metagenome; sediment, water from around vicinity
292
217
-
Pro
TGG
[ENA]
¢þ
>WENV180833743
ODKD01000165
[ODKD] human metagenome; G_DNA_Supragingival plaque
493
418
-
Pro
TGG
[ENA]
¢þ
>WENV181007615
ODWE01000298
[ODWE] human metagenome; G_DNA_Supragingival plaque
257
182
-
Pro
TGG
[ENA]
¢þ
>WENV181051260
ODYD01299396
[ODYD] human metagenome; G_DNA_Supragingival plaque
57
132
+
Pro
TGG
[ENA]
¢þ
>WENV181070435
OEAE01001533
[OEAE] human metagenome; G_DNA_Supragingival plaque
489
414
-
Pro
TGG
[ENA]
¢þ
>WENV181178629
OEJT01000098
[OEJT] human metagenome; G_DNA_Supragingival plaque
79
4
-
Pro
TGG
[ENA]
¢þ
>WENV181838593
OGVN01004905
[OGVN] freshwater metagenome; freshwater
732
657
-
Pro
TGG
[ENA]
¢þ
>WENV181844663
OGVW01016678
[OGVW] freshwater metagenome; freshwater
606
681
+
Pro
TGG
[ENA]
¢þ
>WENV183092227
OLKW01000274
[OLKW] soil metagenome; soil
18205
18280
+
Pro
TGG
[ENA]
¢þ
>WENV183729771
PJTR01000068
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
120505
120430
-
Pro
TGG
[ENA]
¢þ
>WENV183731091
PJTS01008660
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
624
549
-
Pro
TGG
[ENA]
¢þ
>C191134768
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1390816
1390891
+
Pro
TGG
-
¡û
>C191134770
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1391040
1391115
+
Pro
TGG
-
¡û
>C191210761
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1227822
1227747
-
Pro
TGG
-
¡û
>C191210764
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1227519
1227444
-
Pro
TGG
-
¡û
>C141012313
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
1370953
1371030
+
Pro
TGG
-
¡û
>C141012318
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
2094080
2094157
+
Pro
TGG
-
¡û
>W1910577997
JUIX01000006
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
84295
84220
-
Pro
TGG
[ENA]
¡û
>W1910577998
JUIX01000006
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
84188
84113
-
Pro
TGG
[ENA]
¡û
>W1910578022
JUIX01000029
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
13469
13394
-
Pro
TGG
[ENA]
¡û
>W1911533989
OLKH01000086
Bacteroidota
Flavobacterium columnare [OLKH]
1254
1179
-
Pro
TGG
[ENA]
¡û
>W1911533992
OLKH01000086
Bacteroidota
Flavobacterium columnare [OLKH]
929
854
-
Pro
TGG
[ENA]
¡û
>W1911534010
OLKH01000102
Bacteroidota
Flavobacterium columnare [OLKH]
13236
13161
-
Pro
TGG
[ENA]
¡û
>C151013068
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
325325
325248
-
Pro
TGG
[Ensembl]
¡û
>C151013070
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
325098
325021
-
Pro
TGG
[Ensembl]
¡û
>ENV09003052
ADGO01002594
Compost metagenome contig00001
243
166
-
Pro
TGG
[ENA]
¡û
>C11123809
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1880576
1880651
+
Pro
TGG
[Ensembl]
¡û
>C121010297
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
319081
319004
-
Pro
TGG
[Ensembl]
¡û
>C121010299
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
318854
318777
-
Pro
TGG
[Ensembl]
¡û
>W1610029719
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260404
260327
-
Pro
TGG
[ENA]
¡û
>W1610029721
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260177
260100
-
Pro
TGG
[ENA]
¡û
>W1610535004
JRLV01000001
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
255055
254978
-
Pro
TGG
[ENA]
¡û
>W1610535015
JRLV01000009
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
106673
106596
-
Pro
TGG
[ENA]
¡û
>W1610535043
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
197967
198044
+
Pro
TGG
[ENA]
¡û
>W1610535048
JRLW01000004
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
102246
102323
+
Pro
TGG
[ENA]
¡û
>W1710027089
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260404
260327
-
Pro
TGG
[ENA]
¡û
>W1710027091
AXDE01000002
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
260177
260100
-
Pro
TGG
[ENA]
¡û
>W1710507348
FMVF01000002
Bacteroidota
Flavobacterium caeni [FMVF]
96
19
-
Pro
TGG
[ENA]
¡û
>W1710507378
FMVF01000015
Bacteroidota
Flavobacterium caeni [FMVF]
96
19
-
Pro
TGG
[ENA]
¡û
>W1710637240
JRLV01000001
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
255055
254978
-
Pro
TGG
[ENA]
¡û
>W1710637251
JRLV01000009
Bacteroidota
Flavobacterium beibuense F44-8 [JRLV]
106673
106596
-
Pro
TGG
[ENA]
¡û
>W1710637279
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
197967
198044
+
Pro
TGG
[ENA]
¡û
>W1710637284
JRLW01000004
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
102246
102323
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK