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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243206 (98 seq.)
>W1711006269
LQOE01000105
Bacillota
Lactococcus sp. DD01 [LQOE]
209
282
+
His
GTG
[ENA]
¡û
>W1711228196
LXWJ01000003
Bacillota
Lactococcus lactis [LXWJ]
214406
214480
+
His
GTG
[ENA]
¡û
>W1711228330
LXWL01000011
Bacillota
Lactococcus garvieae [LXWL]
77241
77168
-
His
GTG
[ENA]
¡û
>W1711744880
MUIZ01000007
Bacillota
Lactococcus petauri 159469 [MUIZ]
336
409
+
His
GTG
[ENA]
¡û
>W1711942781
NBBK01000012
Bacillota
Lactococcus garvieae [NBBK]
235
308
+
His
GTG
[ENA]
¡û
>C171042286
CP015894
Bacillota
Lactococcus cremoris 158 [CP015894]
2221109
2221035
-
His
GTG
-
¡û
>C171042577
CP015899
Bacillota
Lactococcus cremoris JM1 [CP015899]
2355597
2355523
-
His
GTG
-
¡û
>C171042627
CP015900
Bacillota
Lactococcus cremoris JM2 [CP015900]
2332394
2332320
-
His
GTG
-
¡û
>C171042691
CP015901
Bacillota
Lactococcus cremoris JM3 [CP015901]
2125183
2125109
-
His
GTG
-
¡û
>C171043066
CP015907
Bacillota
Lactococcus cremoris UC109 [CP015907]
1939006
1938932
-
His
GTG
-
¡û
>C171043182
CP015909
Bacillota
Lactococcus cremoris JM4 [CP015909]
2350214
2350140
-
His
GTG
-
¡û
>W131010451
AHYM01000014
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
304
377
+
His
GTG
[ENA]
¡û
>W131037513
AMFD01000010
Bacillota
Lactococcus garvieae I113 [AMFD]
74212
74139
-
His
GTG
[ENA]
¡û
>W131037585
AMFE01000091
Bacillota
Lactococcus garvieae Tac2 [AMFE]
101
28
-
His
GTG
[ENA]
¡û
>W131044511
AMQS01000027
Bacillota
Lactococcus garvieae DCC43 [AMQS]
234
307
+
His
GTG
[ENA]
¡û
>W131202429
ASWT01000004
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
704
777
+
His
GTG
[ENA]
¡û
>C011956
CP000425
Bacillota
Lactococcus cremoris subsp. cremoris SK11 [CP000425]
2396769
2396697
-
His
GTG
[Ensembl]
¡û
>C012075
AM406671
Bacillota
Lactococcus cremoris subsp. cremoris MG1363 [AM406671]
2499916
2499844
-
His
GTG
[Ensembl]
¡û
>WENV180455466
OBXO01004711
[OBXO] human gut metagenome; faeces
264
337
+
His
GTG
[ENA]
¢þ
>W141073889
ASXF01000001
Bacillota
Lactococcus cremoris subsp. cremoris TIFN1 [ASXF]
668
742
+
His
GTG
[ENA]
¡û
>W141075682
ATBA01000185
Bacillota
Lactococcus cremoris subsp. cremoris TIFN7 [ATBA]
402
476
+
His
GTG
[ENA]
¡û
>W141075746
ATBB01000540
Bacillota
Lactococcus cremoris subsp. cremoris TIFN6 [ATBB]
643
717
+
His
GTG
[ENA]
¡û
>W141075784
ATBC01000146
Bacillota
Lactococcus cremoris subsp. cremoris TIFN5 [ATBC]
627
701
+
His
GTG
[ENA]
¡û
>W141075911
ATBE01000298
Bacillota
Lactococcus cremoris subsp. cremoris TIFN3 [ATBE]
24457
24383
-
His
GTG
[ENA]
¡û
>W141096228
AVFE01000026
Bacillota
Lactococcus garvieae TRF1 [AVFE]
32541
32467
-
His
GTG
[ENA]
¡û
>W141213937
AZSI01000039
Bacillota
Lactococcus cremoris subsp. cremoris GE214 [AZSI]
10627
10553
-
His
GTG
[ENA]
¡û
>WENV182180964
OHNO01041609
[OHNO] human gut metagenome; feces
76
2
-
His
GTG
[ENA]
¢þ
>W141238112
BBJW01000042
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
7367
7294
-
His
GTG
[ENA]
¡û
>WENV182612828
OJJY01019602
[OJJY] metagenome; faeces
220
294
+
His
GTG
[ENA]
¢þ
>W141292083
JAUH01000162
Bacillota
Lactococcus cremoris subsp. cremoris HP [JAUH]
184
258
+
His
GTG
[ENA]
¡û
>WENV170547742
CXTS01000064
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
2217
2144
-
His
GTG
[ENA]
¢þ
>WENV170548298
CXUD01000240
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
344
271
-
His
GTG
[ENA]
¢þ
>WENV170549694
CXVH01000522
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
549
622
+
His
GTG
[ENA]
¢þ
>C181001697
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1243321
1243394
+
His
GTG
-
¡û
>C181201649
CP031538
Bacillota
Lactococcus cremoris 3107 [CP031538]
2349483
2349409
-
His
GTG
-
¡û
>C191002620
AP018499
Bacillota
Lactococcus cremoris C4 [AP018499]
554043
554117
+
His
GTG
-
¡û
>C191044527
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1934774
1934701
-
His
GTG
-
¡û
>W09101685
AAGO01000001
Bacillota
Lactococcus cremoris subsp. cremoris SK11 [AAGO]
931
1005
+
His
GTG
[ENA]
¡û
>C141003852
CP004884
Bacillota
Lactococcus cremoris subsp. cremoris KW2 [CP004884]
2397513
2397439
-
His
GTG
[Ensembl]
¡û
>W1910583261
JXJV01000040
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
240
313
+
His
GTG
[ENA]
¡û
>W1910583406
JXJZ01000174
Bacillota
Lactococcus cremoris subsp. cremoris ATCC 19257 [JXJZ]
215
289
+
His
GTG
[ENA]
¡û
>W1910583519
JXKC01000010
Bacillota
Lactococcus cremoris subsp. tructae DSM 21502 [JXKC]
211
285
+
His
GTG
[ENA]
¡û
>W1910641544
LTDA01000001
Bacillota
Lactococcus garvieae KS1546 [LTDA]
77172
77099
-
His
GTG
[ENA]
¡û
>W1910796989
MSGR01000170
Bacillota
Lactococcus cremoris subsp. cremoris ASCC880900 [MSGR]
13614
13540
-
His
GTG
[ENA]
¡û
>W1910810161
MUHT01000105
Bacillota
Lactococcus cremoris subsp. cremoris ASCC 1263 [MUHT]
16006
15932
-
His
GTG
[ENA]
¡û
>W1911503323
OESD01000005
Bacillota
Lactococcus lactis [OESD]
79542
79468
-
His
GTG
[ENA]
¡û
>W1911503587
OESJ01000002
Bacillota
Lactococcus lactis [OESJ]
89693
89619
-
His
GTG
[ENA]
¡û
>W1911503739
OESM01000001
Bacillota
Lactococcus lactis [OESM]
113699
113625
-
His
GTG
[ENA]
¡û
>W1911503794
OESN01000009
Bacillota
Lactococcus lactis [OESN]
426
500
+
His
GTG
[ENA]
¡û
>W1911503871
OESP01000010
Bacillota
Lactococcus lactis [OESP]
69261
69187
-
His
GTG
[ENA]
¡û
>W1911631368
PUFD01000015
Bacillota
Lactococcus cremoris subsp. cremoris ATCC 19257 [PUFD]
2616
2542
-
His
GTG
[ENA]
¡û
>W1810705255
QMJD01000011
Bacillota
Lactococcus cremoris subsp. cremoris KMB_596 [QMJD]
83096
83022
-
His
GTG
[ENA]
¡û
>W1810907564
QVHV01000007
Bacillota
Lactococcus petauri AM13-9 [QVHV]
33182
33255
+
His
GTG
[ENA]
¡û
>W1510060199
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1174718
1174791
+
His
GTG
[ENA]
¡û
>W1510060316
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1174718
1174791
+
His
GTG
[ENA]
¡û
>C10108609
CP002094
Bacillota
Lactococcus cremoris subsp. cremoris NZ9000 [CP002094]
2500733
2500659
-
His
GTG
[Ensembl]
¡û
>C11112697
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1918980
1918907
-
His
GTG
[Ensembl]
¡û
>C11112757
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1932809
1932736
-
His
GTG
[Ensembl]
¡û
>W1511314673
JPUJ01000008
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
76842
76769
-
His
GTG
[ENA]
¡û
>W1511327324
JQIC01000014
Bacillota
Lactococcus cremoris subsp. cremoris A17 [JQIC]
573062
572988
-
His
GTG
[ENA]
¡û
>W1511552313
JZUI01000099
Bacillota
Lactococcus cremoris subsp. cremoris Mast36 [JZUI]
85670
85596
-
His
GTG
[ENA]
¡û
>W1511584806
LAVW01000176
Bacillota
Lactococcus cremoris subsp. cremoris DPC6856 [LAVW]
13235
13161
-
His
GTG
[ENA]
¡û
>W1511584855
LAVX01000073
Bacillota
Lactococcus cremoris subsp. cremoris DPC6860 [LAVX]
83389
83315
-
His
GTG
[ENA]
¡û
>W11157434
AFCC01000004
Bacillota
Lactococcus garvieae 21881 [AFCC]
208
281
+
His
GTG
[ENA]
¡û
>W11157522
AFCD01000079
Bacillota
Lactococcus garvieae 8831 [AFCD]
209
282
+
His
GTG
[ENA]
¡û
>W11162754
AFHF01000008
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
4419
4492
+
His
GTG
[ENA]
¡û
>C121006555
CP003132
Bacillota
Lactococcus cremoris subsp. cremoris A76 [CP003132]
2423460
2423386
-
His
GTG
[Ensembl]
¡û
>W121016357
AGQX01000052
Bacillota
Lactococcus garvieae TB25 [AGQX]
341
414
+
His
GTG
[ENA]
¡û
>W121016389
AGQY01000012
Bacillota
Lactococcus garvieae LG9 [AGQY]
43285
43212
-
His
GTG
[ENA]
¡û
>W121081183
AKFO01000002
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
265
338
+
His
GTG
[ENA]
¡û
>W1610072890
BCVK01000113
Bacillota
Lactococcus cremoris subsp. cremoris NBRC 100676 [BCVK]
184
258
+
His
GTG
[ENA]
¡û
>C131002205
CP003157
Bacillota
Lactococcus cremoris subsp. cremoris UC509.9 [CP003157]
2220928
2220854
-
His
GTG
[Ensembl]
¡û
>W1610635091
LISZ01000216
Bacillota
Lactococcus cremoris subsp. cremoris [LISZ]
1649
1575
-
His
GTG
[ENA]
¡û
>W1610635147
LITA01000179
Bacillota
Lactococcus cremoris subsp. cremoris [LITA]
283
357
+
His
GTG
[ENA]
¡û
>W1610635240
LITC01000183
Bacillota
Lactococcus cremoris subsp. cremoris [LITC]
6312
6238
-
His
GTG
[ENA]
¡û
>W1610635271
LITD01000066
Bacillota
Lactococcus cremoris subsp. cremoris [LITD]
1647
1573
-
His
GTG
[ENA]
¡û
>W1610635330
LITE01000138
Bacillota
Lactococcus cremoris subsp. cremoris [LITE]
69093
69019
-
His
GTG
[ENA]
¡û
>W1610635380
LITF01000114
Bacillota
Lactococcus cremoris subsp. cremoris [LITF]
69093
69019
-
His
GTG
[ENA]
¡û
>W1610635435
LITG01000099
Bacillota
Lactococcus cremoris subsp. cremoris [LITG]
283
357
+
His
GTG
[ENA]
¡û
>W1610638831
LIYE01000294
Bacillota
Lactococcus cremoris subsp. cremoris [LIYE]
1647
1573
-
His
GTG
[ENA]
¡û
>W1610638852
LIYF01000015
Bacillota
Lactococcus cremoris subsp. cremoris [LIYF]
283
357
+
His
GTG
[ENA]
¡û
>W1610638934
LIYG01000089
Bacillota
Lactococcus cremoris subsp. cremoris [LIYG]
31427
31353
-
His
GTG
[ENA]
¡û
>W1610856919
LQOE01000105
Bacillota
Lactococcus sp. DD01 [LQOE]
209
282
+
His
GTG
[ENA]
¡û
>W1611012113
LXWJ01000003
Bacillota
Lactococcus lactis [LXWJ]
214406
214480
+
His
GTG
[ENA]
¡û
>W1611012247
LXWL01000011
Bacillota
Lactococcus garvieae [LXWL]
77241
77168
-
His
GTG
[ENA]
¡û
>W1710070008
BCVK01000113
Bacillota
Lactococcus cremoris subsp. cremoris NBRC 100676 [BCVK]
184
258
+
His
GTG
[ENA]
¡û
>W1710568176
FOTJ01000009
Bacillota
Lactococcus garvieae [FOTJ]
548
621
+
His
GTG
[ENA]
¡û
>W1710620264
JMMZ01000035
Bacillota
Lactococcus cremoris subsp. cremoris IBB477 [JMMZ]
267534
267460
-
His
GTG
[ENA]
¡û
>W1710769664
LISZ01000216
Bacillota
Lactococcus cremoris subsp. cremoris [LISZ]
1649
1575
-
His
GTG
[ENA]
¡û
>W1710769720
LITA01000179
Bacillota
Lactococcus cremoris subsp. cremoris [LITA]
283
357
+
His
GTG
[ENA]
¡û
>W1710769813
LITC01000183
Bacillota
Lactococcus cremoris subsp. cremoris [LITC]
6312
6238
-
His
GTG
[ENA]
¡û
>W1710769844
LITD01000066
Bacillota
Lactococcus cremoris subsp. cremoris [LITD]
1647
1573
-
His
GTG
[ENA]
¡û
>W1710769903
LITE01000138
Bacillota
Lactococcus cremoris subsp. cremoris [LITE]
69093
69019
-
His
GTG
[ENA]
¡û
>W1710769953
LITF01000114
Bacillota
Lactococcus cremoris subsp. cremoris [LITF]
69093
69019
-
His
GTG
[ENA]
¡û
>W1710770008
LITG01000099
Bacillota
Lactococcus cremoris subsp. cremoris [LITG]
283
357
+
His
GTG
[ENA]
¡û
>W1710774662
LIYE01000294
Bacillota
Lactococcus cremoris subsp. cremoris [LIYE]
1647
1573
-
His
GTG
[ENA]
¡û
>W1710774683
LIYF01000015
Bacillota
Lactococcus cremoris subsp. cremoris [LIYF]
283
357
+
His
GTG
[ENA]
¡û
>W1710774765
LIYG01000089
Bacillota
Lactococcus cremoris subsp. cremoris [LIYG]
31427
31353
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK