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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243213 (30 seq.)
>W1711414280
MGZH01000084
Thermodesulfobacteriota
Geobacteraceae bacterium GWB2_52_12 [MGZH]
11105
11180
+
Ala
CGC
[ENA]
¡û
>W1711414390
MGZK01000137
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
13490
13565
+
Ala
CGC
[ENA]
¡û
>W1711414414
MGZL01000038
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
49732
49657
-
Ala
CGC
[ENA]
¡û
>W1711414466
MGZM01000192
Thermodesulfobacteriota
Geobacteraceae bacterium GWF2_54_21 [MGZM]
11160
11235
+
Ala
CGC
[ENA]
¡û
>C010009
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
3690064
3690139
+
Ala
CGC
[Ensembl]
¡û
>WENV180037312
FVAA010883688
[FVAA] soil metagenome; Soil
101
26
-
Ala
CGC
[ENA]
¢þ
>WENV180263646
OBEQ011494205
[OBEQ] groundwater metagenome; groundwater
453
528
+
Ala
CGC
[ENA]
¢þ
>WENV180291912
OBIV01224545
[OBIV] soil metagenome; Clay
295
370
+
Ala
CGC
[ENA]
¢þ
>WENV180297533
OBJA01041988
[OBJA] soil metagenome; sediment, water from around vicinity
529
454
-
Ala
CGC
[ENA]
¢þ
>WENV180346012
OBLN01020113
[OBLN] sediment metagenome; sediment
826
751
-
Ala
CGC
[ENA]
¢þ
>W141076081
ATBO01000090
Thermodesulfobacteriota
Desulfuromonas sp. TF [ATBO]
38907
38982
+
Ala
CGC
[ENA]
¡û
>WENV181162257
OEIN01021073
[OEIN] soil metagenome; soil
232
157
-
Ala
CGC
[ENA]
¢þ
>WENV181231062
OFEK01009029
[OFEK] activated sludge metagenome; Anaerobic digester
3343
3418
+
Ala
CGC
[ENA]
¢þ
>WENV181291974
OFHD01014652
[OFHD] soil metagenome; Clay
777
702
-
Ala
CGC
[ENA]
¢þ
>WENV181293677
OFHG01015260
[OFHG] soil metagenome; Clay
756
681
-
Ala
CGC
[ENA]
¢þ
>WENV181294581
OFHH01011847
[OFHH] soil metagenome; Clay
401
476
+
Ala
CGC
[ENA]
¢þ
>WENV181297216
OFHK01017550
[OFHK] soil metagenome; Clay
1212
1287
+
Ala
CGC
[ENA]
¢þ
>WENV181377151
OFRA01002947
[OFRA] wastewater metagenome; Lake Maggiore Verbania
646
721
+
Ala
CGC
[ENA]
¢þ
>WENV183515177
OMKS01049735
[OMKS] sediment metagenome; hot spring sediment
440
365
-
Ala
CGC
[ENA]
¢þ
>WENV170007166
AMWB02091966
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
10854
10929
+
Ala
CGC
[ENA]
¢þ
>WENV170658255
JTFP01076458
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
595
670
+
Ala
CGC
[ENA]
¢þ
>W09100218
AAAS03000003
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
404888
404963
+
Ala
CGC
[ENA]
¡û
>W09133620
ACPJ01000013
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
51613
51538
-
Ala
CGC
[ENA]
¡û
>C09106360
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
4119552
4119477
-
Ala
CGC
[Ensembl]
¡û
>W1810486170
QAXR01000008
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
43846
43771
-
Ala
CGC
[ENA]
¡û
>C151066520
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
353909
353834
-
Ala
CGC
[Ensembl]
¡û
>W1510006430
BAZF01000005
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
227345
227270
-
Ala
CGC
[ENA]
¡û
>C11109577
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
5211590
5211665
+
Ala
CGC
[Ensembl]
¡û
>C161082930
CP015080
Thermodesulfobacteriota
Desulfuromonas sp. DDH964 [CP015080]
3584350
3584275
-
Ala
CGC
[Ensembl]
¡û
>W121010727
AGJM01000009
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
104557
104632
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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