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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24334 (52 seq.)
>W1711705103
MSQD01000007
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
96119
96208
+
Leu
TAA
[ENA]
¡û
>W131051966
AMYG01000022
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
24332
24243
-
Leu
TAA
[ENA]
¡û
>W131167578
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
304559
304470
-
Leu
TAA
[ENA]
¡û
>w010187
AAKQ01000006
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
16441
16530
+
Leu
TAA
[ENA]
¡û
>W141092589
AVAF01000095
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
5107
5018
-
Leu
TAA
[ENA]
¡û
>WENV181226075
OFDK01000019
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
4709
4620
-
Leu
TAA
[ENA]
¢þ
>W141193962
AYSN01000029
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
93172
93261
+
Leu
TAA
[ENA]
¡û
>W141238324
BBKT01000005
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
55167
55256
+
Leu
TAA
[ENA]
¡û
>C08010946
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
729637
729726
+
Leu
TAA
[Ensembl]
¡û
>C08011030
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
294752
294841
+
Leu
TAA
[Ensembl]
¡û
>W141276486
JADV01000017
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
6824
6735
-
Leu
TAA
[ENA]
¡û
>WENV170562384
CZCB01002403
[CZCB] anaerobic digester metagenome; anaerobic digester
17375
17464
+
Leu
TAA
[ENA]
¢þ
>WENV170675641
LDZP01000174
[LDZP] terrestrial metagenome; oil reservoir sample I1
47719
47808
+
Leu
TAA
[ENA]
¢þ
>WENV170676898
LDZS01003115
[LDZS] terrestrial metagenome; oil reservoir sample K3
255
166
-
Leu
TAA
[ENA]
¢þ
>C181021898
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1425625
1425714
+
Leu
TAA
-
¡û
>C191108145
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
62061
61972
-
Leu
TAA
-
¡û
>W09133512
ACPF01000002
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
20534
20623
+
Leu
TAA
[ENA]
¡û
>W09134134
ACQZ01000015
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
10959
10870
-
Leu
TAA
[ENA]
¡û
>W09135018
ACVG01000058
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
6262
6351
+
Leu
TAA
[ENA]
¡û
>W09135042
ACVH01000010
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
43871
43960
+
Leu
TAA
[ENA]
¡û
>W09135143
ACVK01000004
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
77400
77489
+
Leu
TAA
[ENA]
¡û
>W09135843
ACXP01000005
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
81305
81394
+
Leu
TAA
[ENA]
¡û
>W1910747697
MINB01000006
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
8735
8646
-
Leu
TAA
[ENA]
¡û
>W1910976719
NKHD01000024
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
12100
12011
-
Leu
TAA
[ENA]
¡û
>C151045308
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
2089511
2089422
-
Leu
TAA
[Ensembl]
¡û
>W10105948
ACXY01000026
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
20497
20586
+
Leu
TAA
[ENA]
¡û
>W10120467
ADXD01000002
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
60538
60627
+
Leu
TAA
[ENA]
¡û
>C10113392
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
2169205
2169116
-
Leu
TAA
[Ensembl]
¡û
>C10113446
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
2058790
2058701
-
Leu
TAA
[Ensembl]
¡û
>C10113815
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
268849
268938
+
Leu
TAA
[Ensembl]
¡û
>W11108271
ACXY01000026
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
20497
20586
+
Leu
TAA
[ENA]
¡û
>W1511275101
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
767908
767997
+
Leu
TAA
[ENA]
¡û
>C11122457
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
290169
290258
+
Leu
TAA
[Ensembl]
¡û
>C11122719
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
2184945
2184856
-
Leu
TAA
[Ensembl]
¡û
>C11123243
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2477513
2477424
-
Leu
TAA
[Ensembl]
¡û
>C11123281
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
246059
246148
+
Leu
TAA
[Ensembl]
¡û
>W11127076
ADXD01000002
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
60538
60627
+
Leu
TAA
[ENA]
¡û
>W11150438
AEVQ01000006
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
44022
44111
+
Leu
TAA
[ENA]
¡û
>W11152688
AEYS01000042
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
1425
1336
-
Leu
TAA
[ENA]
¡û
>W11152696
AEYS01000277
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
287
198
-
Leu
TAA
[ENA]
¡û
>C121007655
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
947326
947237
-
Leu
TAA
[Ensembl]
¡û
>W1610043670
BAZY01000023
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
30786
30875
+
Leu
TAA
[ENA]
¡û
>W121068085
AJUD01000007
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
194494
194405
-
Leu
TAA
[ENA]
¡û
>C131001902
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
261968
262057
+
Leu
TAA
[Ensembl]
¡û
>W1610612273
LGEO01000011
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
47719
47808
+
Leu
TAA
[ENA]
¡û
>W1610613194
LGFN01000219
Bacillota
Caldanaerobacter subterraneus [LGFN]
255
166
-
Leu
TAA
[ENA]
¡û
>W1710040830
BAZY01000023
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
30786
30875
+
Leu
TAA
[ENA]
¡û
>W1710515305
FNBS01000016
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
12971
12882
-
Leu
TAA
[ENA]
¡û
>W1710560389
FONI01000055
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
7323
7234
-
Leu
TAA
[ENA]
¡û
>W1710583310
FQUR01000011
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
153571
153660
+
Leu
TAA
[ENA]
¡û
>W1710733779
LGEO01000011
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
47719
47808
+
Leu
TAA
[ENA]
¡û
>W1710734401
LGFN01000219
Bacillota
Caldanaerobacter subterraneus [LGFN]
255
166
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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