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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243340 (50 seq.)
>W1710880435
LMSI01000024
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
57620
57695
+
Lys
TTT
[ENA]
¡û
>W1711106892
LTSH01000024
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
5634
5561
-
Lys
TTT
[ENA]
¡û
>W1711184049
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
572752
572825
+
Lys
TTT
[ENA]
¡û
>W1711186340
LWOD01000030
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
11481
11408
-
Lys
TTT
[ENA]
¡û
>W1711186839
LWON01000062
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
33821
33896
+
Lys
TTT
[ENA]
¡û
>W1711188262
LWQH01000007
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
5630
5555
-
Lys
TTT
[ENA]
¡û
>W1711206782
LXEY01000019
Actinomycetota
Enteractinococcus helveticum [LXEY]
203634
203709
+
Lys
TTT
[ENA]
¡û
>W1711372157
MDSS02000018
Actinomycetota
Nesterenkonia sp. PF2B19 [MDSS]
381
456
+
Lys
TTT
[ENA]
¡û
>C171040588
CP015732
Actinomycetota
Arthrobacter sp. U41 [CP015732]
1531181
1531254
+
Lys
TTT
-
¡û
>WENV180029224
FTJI01223508
[FTJI] metagenome; soil
954
880
-
Lys
TTT
[ENA]
¢þ
>WENV180312842
OBJZ01000381
[OBJZ] human gut metagenome; fecal sample
11095
11022
-
Lys
TTT
[ENA]
¢þ
>WENV181191261
OEPS010047130
[OEPS] soil metagenome; soil
672
599
-
Lys
TTT
[ENA]
¢þ
>W141241453
CAHH01000075
Actinomycetota
Timonella senegalensis JC301 [CAHH]
30652
30727
+
Lys
TTT
[ENA]
¡û
>WENV182645719
OJLZ01001221
[OJLZ] metagenome; surface
1213
1139
-
Lys
TTT
[ENA]
¢þ
>WENV182645895
OJLZ01008247
[OJLZ] metagenome; surface
1260
1333
+
Lys
TTT
[ENA]
¢þ
>WENV182812809
OJXV01000052
[OJXV] human gut metagenome; human gut
11159
11086
-
Lys
TTT
[ENA]
¢þ
>WENV182962551
OKWN01004041
[OKWN] human gut metagenome; stool
318
245
-
Lys
TTT
[ENA]
¢þ
>WENV183511342
OMJG01000043
[OMJG] food metagenome; Cotija cheese
181
108
-
Lys
TTT
[ENA]
¢þ
>WENV183697327
OUNJ010379598
[OUNJ] metagenome; soil
462
536
+
Lys
TTT
[ENA]
¢þ
>W141426488
JEMO01000006
Actinomycetota
Nesterenkonia sp. AN1 [JEMO]
301843
301918
+
Lys
TTT
[ENA]
¡û
>W141452950
JFCH01000031
Actinomycetota
Corynebacterium jeikeium [JFCH]
42824
42897
+
Lys
TTT
[ENA]
¡û
>W141453452
JFCR01000014
Actinomycetota
Corynebacterium jeikeium [JFCR]
7545
7472
-
Lys
TTT
[ENA]
¡û
>C181033495
CP018863
Actinomycetota
Arthrobacter crystallopoietes DSM 20117 [CP018863]
1662888
1662962
+
Lys
TTT
-
¡û
>C191165892
CP039424
Actinomycetota
Citricoccus sp. SGAir0253 [CP039424]
95115
95190
+
Lys
TTT
-
¡û
>W1911752179
QWLD01000024
Actinomycetota
Nesterenkonia muleiensis RB2 [QWLD]
71868
71793
-
Lys
TTT
[ENA]
¡û
>W1911810675
QYZP01000001
Actinomycetota
Nesterenkonia natronophila M8 [QYZP]
435568
435643
+
Lys
TTT
[ENA]
¡û
>W1810167483
PJIN01000003
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
121210
121284
+
Lys
TTT
[ENA]
¡û
>W1810167965
PJIX01000001
Actinomycetota
Arthrobacter sp. 08Y14 [PJIX]
1283595
1283670
+
Lys
TTT
[ENA]
¡û
>W1810171970
PJMB01000006
Actinomycetota
Arthrobacter sp. AFG7.2 [PJMB]
181216
181289
+
Lys
TTT
[ENA]
¡û
>W1810187325
PKHM01000006
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
86292
86365
+
Lys
TTT
[ENA]
¡û
>W1810242497
PPXB01000005
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
109631
109557
-
Lys
TTT
[ENA]
¡û
>W1810365259
PVTY01000004
Actinomycetota
Nesterenkonia sandarakina CG 35 [PVTY]
138612
138537
-
Lys
TTT
[ENA]
¡û
>W1810569947
QEHL01000001
Actinomycetota
Pseudarthrobacter sp. AG30 [QEHL]
63275
63201
-
Lys
TTT
[ENA]
¡û
>W1810673982
QJVD01000030
Actinomycetota
Arthrobacter livingstonensis LI2 [QJVD]
22620
22695
+
Lys
TTT
[ENA]
¡û
>W1810789431
QRGQ01000003
Actinomycetota
Arthrobacter sp. RT-1 [QRGQ]
47303
47377
+
Lys
TTT
[ENA]
¡û
>C151005940
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
2651809
2651734
-
Lys
TTT
[Ensembl]
¡û
>W1510089375
CECE01000002
Actinomycetota
Arthrobacter koreensis 5J12A [CECE]
35520
35445
-
Lys
TTT
[ENA]
¡û
>W1511442763
JUSD01000014
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
1032
957
-
Lys
TTT
[ENA]
¡û
>W1511459399
JVKJ01000004
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
15798
15725
-
Lys
TTT
[ENA]
¡û
>W1511469457
JVVM01000017
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
41938
42013
+
Lys
TTT
[ENA]
¡û
>W1511524506
JYFC01000002
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
676429
676354
-
Lys
TTT
[ENA]
¡û
>W1511585543
LAYQ01000028
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
6227
6154
-
Lys
TTT
[ENA]
¡û
>C161039622
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
1959004
1958931
-
Lys
TTT
[Ensembl]
¡û
>C161060685
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
3410924
3410849
-
Lys
TTT
[Ensembl]
¡û
>W121127408
CAFW01000084
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
14151
14076
-
Lys
TTT
[ENA]
¡û
>W1610527136
JPWK01000030
Actinomycetota
Arthrobacter sp. ATCC 21022 ATCC 21022 KY 3901 [JPWK]
177036
176961
-
Lys
TTT
[ENA]
¡û
>W1610742781
LMSI01000024
Actinomycetota
Arthrobacter sp. Soil764 [LMSI]
57620
57695
+
Lys
TTT
[ENA]
¡û
>W1610989931
LWLP01000001
Actinomycetota
Arthrobacter sp. OY3WO11 [LWLP]
572752
572825
+
Lys
TTT
[ENA]
¡û
>W1610995034
LXEY01000019
Actinomycetota
Enteractinococcus helveticum [LXEY]
203634
203709
+
Lys
TTT
[ENA]
¡û
>W1710526425
FNKH01000002
Actinomycetota
Arthrobacter crystallopoietes [FNKH]
1828355
1828280
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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