This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243341 (20 seq.)
>W1710914760
LNTU01000012
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
181437
181362
-
Thr
TGT
[ENA]
¡û
>W1711318159
MAYB01000001
Alphaproteobacteria
Nitratireductor aquibiodomus [MAYB]
599315
599390
+
Thr
TGT
[ENA]
¡û
>W131045498
AMRM01000026
Alphaproteobacteria
Nitratireductor pacificus pht-3B [AMRM]
49332
49407
+
Thr
TGT
[ENA]
¡û
>W141229356
BAMP01000011
Alphaproteobacteria
Nitratireductor aquibiodomus JCM 21793 [BAMP]
68051
68126
+
Thr
TGT
[ENA]
¡û
>W141242818
CAIU01000007
Alphaproteobacteria
Pseudaminobacter salicylatoxidans KCT001 [CAIU]
8854
8779
-
Thr
TGT
[ENA]
¡û
>WENV182951574
OKVU01002640
[OKVU] human gut metagenome; human gut
820
895
+
Thr
TGT
[ENA]
¢þ
>WENV170855887
MDTA01214424
[MDTA] marine metagenome; seawater
12253
12328
+
Thr
TGT
[ENA]
¢þ
>WENV170893603
MDTD01054186
[MDTD] marine metagenome; seawater
1360
1435
+
Thr
TGT
[ENA]
¢þ
>WENV170963962
MRWG01001633
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2441
2516
+
Thr
TGT
[ENA]
¢þ
>C181176156
CP029208
Alphaproteobacteria
Nitratireductor sp. OM-1 [CP029208]
3174953
3174878
-
Thr
TGT
-
¡û
>W1911810730
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
2752633
2752708
+
Thr
TGT
[ENA]
¡û
>W1810064652
PDVP01000007
Alphaproteobacteria
Zhengella mangrovi X9-2-2 [PDVP]
209905
209830
-
Thr
TGT
[ENA]
¡û
>W1810595890
QGGG01000002
Alphaproteobacteria
Pseudaminobacter salicylatoxidans DSM 6986 [QGGG]
7856
7931
+
Thr
TGT
[ENA]
¡û
>W1511588812
LBCQ01000003
Alphaproteobacteria
Aquamicrobium sp. LC103 LC103 [LBCQ]
235309
235384
+
Thr
TGT
[ENA]
¡û
>W1511687978
LFVY01000018
Alphaproteobacteria
Nitratireductor soli ZZ-1 [LFVY]
119002
119077
+
Thr
TGT
[ENA]
¡û
>W121071480
AJXZ01000018
Alphaproteobacteria
Nitratireductor aquibiodomus RA22 [AJXZ]
60713
60788
+
Thr
TGT
[ENA]
¡û
>W1610773119
LNTU01000012
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
181437
181362
-
Thr
TGT
[ENA]
¡û
>W1611061577
MAYB01000001
Alphaproteobacteria
Nitratireductor aquibiodomus [MAYB]
599315
599390
+
Thr
TGT
[ENA]
¡û
>W1710535319
FNSL01000001
Alphaproteobacteria
Nitratireductor aquibiodomus ES.061 [FNSL]
513509
513434
-
Thr
TGT
[ENA]
¡û
>W1710578125
FPBI01000007
Alphaproteobacteria
Mesorhizobium sp. YR577 [FPBI]
107256
107331
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK