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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243378 (76 seq.)
>W131002335
AGYT01000006
Bacillota
Clostridium thermobutyricum 209318 [AGYT]
2633
2558
-
Pro
TGG
[ENA]
¡û
>W131002359
AGYT01000012
Bacillota
Clostridium thermobutyricum 209318 [AGYT]
618
543
-
Pro
TGG
[ENA]
¡û
>W131002363
AGYT01000012
Bacillota
Clostridium thermobutyricum 209318 [AGYT]
170
95
-
Pro
TGG
[ENA]
¡û
>W1711090782
LTAY01000010
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
76674
76749
+
Pro
TGG
[ENA]
¡û
>W1711090786
LTAY01000010
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
77124
77199
+
Pro
TGG
[ENA]
¡û
>W1711090809
LTAY01000024
Bacillota
Clostridium thermobutyricum DSM 4928 [LTAY]
2748
2673
-
Pro
TGG
[ENA]
¡û
>W1711128574
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
87494
87569
+
Pro
TGG
[ENA]
¡û
>W1711128577
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
87932
88007
+
Pro
TGG
[ENA]
¡û
>W1711128605
LUSO01000022
Bacillota
Clostridium baratii [LUSO]
123845
123920
+
Pro
TGG
[ENA]
¡û
>W1711462024
MJHL01000001
Bacillota
Clostridium baratii [MJHL]
20818
20743
-
Pro
TGG
[ENA]
¡û
>W1711462035
MJHL01000006
Bacillota
Clostridium baratii [MJHL]
4700
4625
-
Pro
TGG
[ENA]
¡û
>W1711462038
MJHL01000006
Bacillota
Clostridium baratii [MJHL]
4262
4187
-
Pro
TGG
[ENA]
¡û
>W1711462111
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
4927
4852
-
Pro
TGG
[ENA]
¡û
>W1711462114
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
4489
4414
-
Pro
TGG
[ENA]
¡û
>W1711462170
MJHM01000030
Bacillota
Clostridium baratii [MJHM]
123793
123868
+
Pro
TGG
[ENA]
¡û
>W1711462180
MJHN01000002
Bacillota
Clostridium baratii [MJHN]
20755
20680
-
Pro
TGG
[ENA]
¡û
>W1711462236
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
4892
4817
-
Pro
TGG
[ENA]
¡û
>W1711462239
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
4454
4379
-
Pro
TGG
[ENA]
¡û
>C171030603
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
2187210
2187135
-
Pro
TGG
-
¡û
>C171030624
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1453997
1453922
-
Pro
TGG
-
¡û
>C171030627
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1453557
1453482
-
Pro
TGG
-
¡û
>WENV180159955
OAVB01034779
[OAVB] human gut metagenome; faeces
226
301
+
Pro
TGG
[ENA]
¢þ
>WENV180275694
OBHU01000098
[OBHU] human gut metagenome; feces
2205
2130
-
Pro
TGG
[ENA]
¢þ
>WENV180275900
OBHU01000781
[OBHU] human gut metagenome; feces
215
140
-
Pro
TGG
[ENA]
¢þ
>WENV180477196
OBYZ01000275
[OBYZ] human gut metagenome; faeces
2205
2130
-
Pro
TGG
[ENA]
¢þ
>WENV180477429
OBYZ01000743
[OBYZ] human gut metagenome; faeces
22509
22584
+
Pro
TGG
[ENA]
¢þ
>WENV180477820
OBYZ01017690
[OBYZ] human gut metagenome; faeces
376
301
-
Pro
TGG
[ENA]
¢þ
>WENV180579742
OCMD01029505
[OCMD] human gut metagenome; human gut
395
470
+
Pro
TGG
[ENA]
¢þ
>WENV180941750
ODTZ01013187
[ODTZ] human metagenome; G_DNA_Stool
2494
2419
-
Pro
TGG
[ENA]
¢þ
>W141111824
AVSV01000011
Bacillota
Clostridium sp. Ade.TY [AVSV]
77952
78027
+
Pro
TGG
[ENA]
¡û
>W141111827
AVSV01000011
Bacillota
Clostridium sp. Ade.TY [AVSV]
78364
78439
+
Pro
TGG
[ENA]
¡û
>W141111853
AVSV01000018
Bacillota
Clostridium sp. Ade.TY [AVSV]
53436
53511
+
Pro
TGG
[ENA]
¡û
>WENV181463503
OGEO01004663
[OGEO] metagenome; Human gut stool
416
491
+
Pro
TGG
[ENA]
¢þ
>WENV181520521
OGHD01003286
[OGHD] metagenome; Human gut stool
694
769
+
Pro
TGG
[ENA]
¢þ
>WENV181826346
OGUL01011783
[OGUL] human gut metagenome; faeces
1558
1633
+
Pro
TGG
[ENA]
¢þ
>WENV182067251
OHFD01003399
[OHFD] human gut metagenome; feces
198
123
-
Pro
TGG
[ENA]
¢þ
>WENV182663766
OJMO01038356
[OJMO] human gut metagenome; feces
83
8
-
Pro
TGG
[ENA]
¢þ
>WENV182672864
OJNN01056415
[OJNN] human gut metagenome; human gut
451
376
-
Pro
TGG
[ENA]
¢þ
>WENV182938317
OKVD01002730
[OKVD] human gut metagenome; human gut
2139
2214
+
Pro
TGG
[ENA]
¢þ
>WENV182938320
OKVD01002730
[OKVD] human gut metagenome; human gut
2577
2652
+
Pro
TGG
[ENA]
¢þ
>WENV182945982
OKVK01003574
[OKVK] human gut metagenome; human gut
985
910
-
Pro
TGG
[ENA]
¢þ
>WENV182950273
OKVR01001850
[OKVR] human gut metagenome; human gut
1498
1423
-
Pro
TGG
[ENA]
¢þ
>WENV182952061
OKVV01001717
[OKVV] human gut metagenome; human gut
2210
2285
+
Pro
TGG
[ENA]
¢þ
>WENV183113178
OLNP01006982
[OLNP] human gut metagenome; faeces
2049
1974
-
Pro
TGG
[ENA]
¢þ
>WENV183458524
OMDM01021696
[OMDM] human gut metagenome; feces
725
800
+
Pro
TGG
[ENA]
¢þ
>W1810367575
PVXQ01000002
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
13941
13866
-
Pro
TGG
[ENA]
¡û
>W1810367618
PVXQ01000044
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
21837
21912
+
Pro
TGG
[ENA]
¡û
>W1810367626
PVXQ01000044
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
22770
22845
+
Pro
TGG
[ENA]
¡û
>C151014183
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
894008
894083
+
Pro
TGG
[Ensembl]
¡û
>C151014200
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1628317
1628392
+
Pro
TGG
[Ensembl]
¡û
>C151014203
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1628755
1628830
+
Pro
TGG
[Ensembl]
¡û
>W1511551740
JZTY01000006
Bacillota
Clostridium baratii 771-14 [JZTY]
430484
430559
+
Pro
TGG
[ENA]
¡û
>W1511551771
JZTY01000019
Bacillota
Clostridium baratii 771-14 [JZTY]
566
491
-
Pro
TGG
[ENA]
¡û
>W1511551774
JZTY01000019
Bacillota
Clostridium baratii 771-14 [JZTY]
127
52
-
Pro
TGG
[ENA]
¡û
>W1511687820
LFVU01000001
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
227
152
-
Pro
TGG
[ENA]
¡û
>W1511687867
LFVU01000024
Bacillota
Clostridium cylindrosporum DSM 605 [LFVU]
45082
45007
-
Pro
TGG
[ENA]
¡û
>W1610103128
CZAV01000002
Bacillota
Clostridium baratii [CZAV]
413240
413315
+
Pro
TGG
[ENA]
¡û
>W1610103132
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
19323
19248
-
Pro
TGG
[ENA]
¡û
>W1610103135
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
18886
18811
-
Pro
TGG
[ENA]
¡û
>W1610104205
CZBO01000002
Bacillota
Clostridium baratii [CZBO]
419385
419460
+
Pro
TGG
[ENA]
¡û
>W1610104222
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167032
167107
+
Pro
TGG
[ENA]
¡û
>W1610104225
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167469
167544
+
Pro
TGG
[ENA]
¡û
>W1610616813
LGRR01000002
Bacillota
Clostridium baratii [LGRR]
20891
20816
-
Pro
TGG
[ENA]
¡û
>W1610616831
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
88398
88473
+
Pro
TGG
[ENA]
¡û
>W1610616834
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
88837
88912
+
Pro
TGG
[ENA]
¡û
>W1710105883
CZAV01000002
Bacillota
Clostridium baratii [CZAV]
413240
413315
+
Pro
TGG
[ENA]
¡û
>W1710105887
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
19323
19248
-
Pro
TGG
[ENA]
¡û
>W1710105890
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
18886
18811
-
Pro
TGG
[ENA]
¡û
>W1710106909
CZBO01000002
Bacillota
Clostridium baratii [CZBO]
419385
419460
+
Pro
TGG
[ENA]
¡û
>W1710106926
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167032
167107
+
Pro
TGG
[ENA]
¡û
>W1710106929
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167469
167544
+
Pro
TGG
[ENA]
¡û
>W1710578895
FPBY01000012
Bacillota
Clostridium sp. DSM 8431 [FPBY]
35300
35375
+
Pro
TGG
[ENA]
¡û
>W1710578927
FPBY01000180
Bacillota
Clostridium sp. DSM 8431 [FPBY]
3911
3986
+
Pro
TGG
[ENA]
¡û
>W1710742152
LGRR01000002
Bacillota
Clostridium baratii [LGRR]
20891
20816
-
Pro
TGG
[ENA]
¡û
>W1710742170
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
88398
88473
+
Pro
TGG
[ENA]
¡û
>W1710742173
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
88837
88912
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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